Variant report

Variant	rs10501620
Chromosome Location	chr11:86155131-86155132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86150631..86153511-chr11:86154013..86155677,2	K562	blood:
2	chr11:86152679..86155183-chr11:86156191..86160903,4	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1026243	0.80[CHB][hapmap]
rs10431169	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.94[MKK][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10501619	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10501621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898480	0.82[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs147045	0.86[CHB][hapmap]
rs1841066	0.82[CHB][hapmap]
rs2279046	0.86[CHB][hapmap]
rs2446228	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs2446229	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs3781812	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs498981	0.82[CHB][hapmap]
rs503583	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs511884	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs525764	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs535652	0.86[CHB][hapmap]
rs553351	0.82[CHB][hapmap]
rs582976	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs584068	0.85[EUR][1000 genomes]
rs588287	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs589174	0.82[CHB][hapmap]
rs589368	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs590401	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs593853	0.82[CHB][hapmap]
rs596056	0.86[CHB][hapmap]
rs597296	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs601824	0.82[CHB][hapmap]
rs603890	0.83[AMR][1000 genomes]
rs605251	0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs605618	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap]
rs609848	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs610842	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs612163	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[AMR][1000 genomes]
rs61294211	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61598129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs616018	0.82[CHB][hapmap]
rs618513	0.90[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs619195	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes]
rs623478	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs624843	0.82[CHB][hapmap]
rs624870	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs628406	0.86[CHB][hapmap]
rs634509	0.86[CHB][hapmap]
rs636485	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes]
rs638041	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.85[AMR][1000 genomes]
rs638135	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs640310	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes]
rs646798	0.83[AMR][1000 genomes]
rs648798	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs651089	0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs653779	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap]
rs655934	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs659405	0.82[CHB][hapmap]
rs661083	0.83[AMR][1000 genomes]
rs661972	0.83[AMR][1000 genomes]
rs662361	0.86[CHB][hapmap]
rs663262	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs668272	0.82[CHB][hapmap]
rs677700	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs679076	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes]
rs681158	0.83[AMR][1000 genomes]
rs687804	0.82[CHB][hapmap]
rs689039	0.85[AMR][1000 genomes]
rs7130920	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs7946950	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
2	chr11:86138600-86167400	Weak transcription	Fetal Lung	lung
3	chr11:86140800-86155800	Weak transcription	Psoas Muscle	Psoas
4	chr11:86142000-86167400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:86142600-86156000	Weak transcription	Spleen	Spleen
6	chr11:86142800-86157600	Weak transcription	Gastric	stomach
7	chr11:86145400-86167400	Weak transcription	Pancreas	Pancrea
8	chr11:86149800-86158600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:86150200-86156200	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:86150200-86158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:86150200-86167400	Weak transcription	Stomach Mucosa	stomach
12	chr11:86150600-86159400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:86151000-86159200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:86151200-86158600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:86151200-86159800	Strong transcription	Fetal Brain Female	brain
16	chr11:86151200-86159800	Strong transcription	Fetal Stomach	stomach
17	chr11:86151400-86158400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:86151800-86167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:86151800-86167400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:86152000-86158600	Strong transcription	Brain Germinal Matrix	brain
21	chr11:86152200-86159400	Strong transcription	Adipose Nuclei	Adipose
22	chr11:86152400-86156400	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:86152400-86164000	Weak transcription	Brain Substantia Nigra	brain
24	chr11:86152400-86172200	Weak transcription	Fetal Brain Male	brain
25	chr11:86152600-86158600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:86152600-86159600	Strong transcription	Stomach Smooth Muscle	stomach
27	chr11:86153000-86161200	Weak transcription	Colonic Mucosa	Colon
28	chr11:86153200-86157200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:86153200-86159200	Weak transcription	Primary T cells from cord blood	blood
30	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
31	chr11:86153400-86156200	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr11:86153400-86158000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:86153400-86159400	Strong transcription	Right Ventricle	heart
34	chr11:86153600-86155200	Enhancers	GM12878-XiMat	blood
35	chr11:86153600-86156200	Strong transcription	Brain Angular Gyrus	brain
36	chr11:86153600-86158600	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:86153600-86158800	Strong transcription	Aorta	Aorta
38	chr11:86153600-86158800	Weak transcription	Liver	Liver
39	chr11:86153800-86155200	Enhancers	Fetal Thymus	thymus
40	chr11:86153800-86157800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:86153800-86158000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:86154000-86158600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:86154000-86158600	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:86154000-86166800	Weak transcription	A549	lung
45	chr11:86154000-86167400	Weak transcription	NH-A	brain
46	chr11:86154000-86169600	Weak transcription	HSMM	muscle
47	chr11:86154000-86170800	Weak transcription	Esophagus	oesophagus
48	chr11:86154200-86155800	Weak transcription	Brain Anterior Caudate	brain
49	chr11:86154200-86157000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:86154200-86159800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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