Variant report

Variant	rs589174
Chromosome Location	chr11:86232497-86232498
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86213664..86215270-chr11:86230808..86233589,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10431169	0.81[CHB][hapmap]
rs10501620	0.82[CHB][hapmap]
rs147045	0.95[CHB][hapmap]
rs1841066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2279046	0.95[CHB][hapmap]
rs2446228	0.95[CHB][hapmap]
rs2446229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs3781812	0.82[CHB][hapmap]
rs498981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs503583	0.95[CHB][hapmap]
rs511884	0.95[CHB][hapmap]
rs525764	1.00[CHB][hapmap]
rs535652	0.95[CHB][hapmap]
rs553351	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs582976	0.95[CHB][hapmap]
rs588287	0.95[CHB][hapmap]
rs589368	0.95[CHB][hapmap]
rs590401	0.91[CHB][hapmap]
rs593853	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs596056	0.95[CHB][hapmap]
rs597296	0.95[CHB][hapmap]
rs601300	0.86[CHB][hapmap]
rs601824	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs605251	0.91[CHB][hapmap]
rs605618	0.95[CHB][hapmap]
rs609848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs610842	1.00[CHB][hapmap]
rs612163	0.95[CHB][hapmap]
rs616018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs618513	0.91[CHB][hapmap]
rs619195	0.95[CHB][hapmap]
rs623478	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs624843	1.00[CHB][hapmap]
rs624870	0.91[CHB][hapmap]
rs625925	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs628406	0.95[CHB][hapmap]
rs628449	0.86[CEU][hapmap]
rs634509	0.95[CHB][hapmap]
rs636485	0.91[CHB][hapmap]
rs638041	0.95[CHB][hapmap]
rs640310	0.95[CHB][hapmap]
rs644086	0.86[CHB][hapmap]
rs648798	1.00[CHB][hapmap]
rs651089	0.91[CHB][hapmap]
rs653779	0.95[CHB][hapmap]
rs655934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs659405	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs662361	0.95[CHB][hapmap]
rs663262	0.91[CHB][hapmap]
rs668272	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs677700	0.91[CHB][hapmap]
rs679076	0.91[CHB][hapmap]
rs687804	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7130920	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
2	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
5	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:86230000-86234600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:86230200-86234600	Weak transcription	Stomach Mucosa	stomach
10	chr11:86230800-86233600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:86230800-86234000	Weak transcription	HSMM	muscle
12	chr11:86230800-86234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:86230800-86234600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:86231000-86234000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:86231000-86234000	Weak transcription	NHEK	skin
16	chr11:86231000-86234200	Weak transcription	HMEC	breast
17	chr11:86231000-86234200	Weak transcription	HSMMtube	muscle
18	chr11:86231000-86234600	Weak transcription	Adipose Nuclei	Adipose
19	chr11:86231000-86235000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:86231000-86235000	Weak transcription	Placenta	Placenta
21	chr11:86231000-86235200	Weak transcription	Fetal Intestine Large	intestine
22	chr11:86231000-86235200	Weak transcription	Fetal Kidney	kidney
23	chr11:86231200-86234000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:86231200-86234200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:86231200-86235000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:86231200-86235000	Weak transcription	Fetal Intestine Small	intestine
27	chr11:86231200-86235200	Weak transcription	Small Intestine	intestine
28	chr11:86231400-86234000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:86231400-86234000	Weak transcription	NH-A	brain
30	chr11:86231400-86234200	Weak transcription	NHDF-Ad	bronchial
31	chr11:86231400-86234400	Weak transcription	Fetal Stomach	stomach
32	chr11:86231400-86234400	Weak transcription	NHLF	lung
33	chr11:86231400-86235000	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:86231400-86237400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:86231600-86234200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:86231600-86234200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:86231600-86235000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:86231600-86235200	Weak transcription	Ovary	ovary
39	chr11:86231800-86234200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:86231800-86234600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:86231800-86234600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:86231800-86234800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:86231800-86235000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:86231800-86235200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:86231800-86235200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:86231800-86236600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:86231800-86237000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:86231800-86237200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
50	chr11:86232000-86234000	Weak transcription	Aorta	Aorta

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