Variant report

Variant	rs659405
Chromosome Location	chr11:86258817-86258818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10431169	0.81[CHB][hapmap]
rs10501620	0.82[CHB][hapmap]
rs10898496	0.83[CEU][hapmap]
rs147045	0.95[CHB][hapmap]
rs1841066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2279046	0.95[CHB][hapmap]
rs2446228	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs2446229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2446231	0.94[ASN][1000 genomes]
rs2511090	0.95[ASN][1000 genomes]
rs36043971	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3781812	0.82[CHB][hapmap]
rs498981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs501362	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs502749	0.96[ASN][1000 genomes]
rs503583	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs509870	0.83[ASN][1000 genomes]
rs511884	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs525764	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs531908	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs535652	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs553351	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs582976	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs585527	0.81[ASN][1000 genomes]
rs588287	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs589174	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs589368	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs590401	0.91[CHB][hapmap]
rs593853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs594106	0.83[ASN][1000 genomes]
rs596056	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs597296	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs597793	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs598187	0.81[ASN][1000 genomes]
rs601300	0.86[CHB][hapmap]
rs601824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs603890	0.81[ASN][1000 genomes]
rs605251	0.91[CHB][hapmap]
rs605618	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs608180	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs609848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs610842	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs612163	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs613412	0.94[ASN][1000 genomes]
rs616018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs618513	0.91[CHB][hapmap]
rs61904415	0.83[ASN][1000 genomes]
rs619195	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs619472	0.90[ASN][1000 genomes]
rs623478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs624236	0.94[ASN][1000 genomes]
rs624843	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs624870	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs625925	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs628406	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs628449	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs630438	0.87[ASN][1000 genomes]
rs634509	0.95[CHB][hapmap]
rs635934	0.95[ASN][1000 genomes]
rs636485	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs638041	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs640310	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs642278	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs643950	0.81[ASN][1000 genomes]
rs644086	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs646691	0.95[ASN][1000 genomes]
rs646798	0.81[ASN][1000 genomes]
rs648798	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs651089	0.91[CHB][hapmap]
rs653779	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs655868	0.82[ASN][1000 genomes]
rs655934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs658166	0.94[ASN][1000 genomes]
rs661083	0.81[ASN][1000 genomes]
rs661972	0.81[ASN][1000 genomes]
rs662361	0.95[CHB][hapmap]
rs663262	0.91[CHB][hapmap]
rs668270	0.81[ASN][1000 genomes]
rs668272	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs670602	0.87[ASN][1000 genomes]
rs674250	0.81[ASN][1000 genomes]
rs677700	0.91[CHB][hapmap]
rs679076	0.91[CHB][hapmap]
rs679382	0.95[ASN][1000 genomes]
rs680846	0.82[ASN][1000 genomes]
rs681158	0.81[ASN][1000 genomes]
rs687804	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs694952	0.95[ASN][1000 genomes]
rs7130920	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9645702	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
2	chr11:86236000-86259000	Weak transcription	Ovary	ovary
3	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86241800-86259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:86249800-86261800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:86250400-86261600	Weak transcription	Gastric	stomach
7	chr11:86251200-86261600	Weak transcription	Right Ventricle	heart
8	chr11:86253000-86259000	Weak transcription	Lung	lung
9	chr11:86256600-86262400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:86257800-86262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:86258600-86261000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:86258800-86259200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:86258800-86259200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:86258800-86259200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:86258800-86259200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:86258800-86259400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:86258800-86259400	Enhancers	Brain Angular Gyrus	brain
18	chr11:86258800-86259400	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:86258800-86259400	Enhancers	Fetal Heart	heart
20	chr11:86258800-86259400	Enhancers	Stomach Smooth Muscle	stomach
21	chr11:86258800-86259600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:86258800-86259600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:86258800-86259600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:86258800-86259600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:86258800-86259800	Enhancers	Brain Hippocampus Middle	brain
26	chr11:86258800-86260000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:86258800-86260000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:86258800-86260000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:86258800-86260000	Enhancers	Fetal Kidney	kidney
30	chr11:86258800-86260000	Enhancers	Fetal Muscle Leg	muscle
31	chr11:86258800-86260000	Enhancers	Fetal Stomach	stomach
32	chr11:86258800-86260000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:86258800-86260000	Enhancers	HMEC	breast
34	chr11:86258800-86260200	Enhancers	Adipose Nuclei	Adipose
35	chr11:86258800-86260200	Enhancers	Brain Anterior Caudate	brain
36	chr11:86258800-86260200	Enhancers	NHEK	skin
37	chr11:86258800-86260400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:86258800-86260400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:86258800-86260400	Enhancers	Aorta	Aorta
40	chr11:86258800-86260800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:86258800-86260800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:86258800-86260800	Enhancers	NHDF-Ad	bronchial
43	chr11:86258800-86260800	Enhancers	NHLF	lung
44	chr11:86258800-86261000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr11:86258800-86261000	Enhancers	Fetal Brain Female	brain
46	chr11:86258800-86261200	Enhancers	NH-A	brain
47	chr11:86258800-86262200	Enhancers	HUVEC	blood vessel
48	chr11:86258800-86263400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:86258800-86263400	Enhancers	Fetal Brain Male	brain
50	chr11:86258800-86263400	Enhancers	Psoas Muscle	Psoas

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