Variant report

Variant	rs36043971
Chromosome Location	chr11:86244854-86244855
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1841066	0.85[ASN][1000 genomes]
rs2446229	0.81[ASN][1000 genomes]
rs2446231	0.83[ASN][1000 genomes]
rs2511090	0.84[ASN][1000 genomes]
rs498981	0.85[ASN][1000 genomes]
rs501362	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs502749	0.85[ASN][1000 genomes]
rs531908	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs553351	0.81[ASN][1000 genomes]
rs593853	0.81[ASN][1000 genomes]
rs597793	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs601824	0.83[ASN][1000 genomes]
rs608180	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609848	0.83[ASN][1000 genomes]
rs613412	0.83[ASN][1000 genomes]
rs616018	0.85[ASN][1000 genomes]
rs619472	0.81[ASN][1000 genomes]
rs623478	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs624236	0.83[ASN][1000 genomes]
rs625925	0.84[ASN][1000 genomes]
rs628449	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs635934	0.84[ASN][1000 genomes]
rs642278	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs646691	0.84[ASN][1000 genomes]
rs655934	0.82[ASN][1000 genomes]
rs658166	0.83[ASN][1000 genomes]
rs659405	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs679382	0.84[ASN][1000 genomes]
rs687804	0.82[ASN][1000 genomes]
rs694952	0.84[ASN][1000 genomes]
rs9645702	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
2	chr11:86232200-86250600	Weak transcription	Right Ventricle	heart
3	chr11:86236000-86259000	Weak transcription	Ovary	ovary
4	chr11:86236200-86258600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86238000-86258800	Weak transcription	Fetal Stomach	stomach
7	chr11:86241800-86259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:86243200-86245400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:86244000-86245000	Enhancers	A549	lung
10	chr11:86244800-86258800	Weak transcription	Adipose Nuclei	Adipose
11	chr11:86244800-86258800	Weak transcription	Brain Angular Gyrus	brain

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