The 2.0 version of rSNPBase

Variant report

Variant rs624236
Chromosome Location chr11:86210259-86210260
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:86160200-86221000 Weak transcription Primary T cells from cord blood blood
2 chr11:86172400-86227000 Weak transcription Brain Cingulate Gyrus brain
3 chr11:86187600-86218600 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr11:86188000-86210400 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr11:86189200-86222600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr11:86189600-86221600 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr11:86195200-86222200 Weak transcription Rectal Smooth Muscle rectum
8 chr11:86196200-86213600 Weak transcription Brain Germinal Matrix brain
9 chr11:86198000-86211000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr11:86198200-86210600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr11:86198600-86222800 Weak transcription Esophagus oesophagus
12 chr11:86202800-86226400 Weak transcription Fetal Lung lung
13 chr11:86204000-86222200 Weak transcription Colon Smooth Muscle Colon
14 chr11:86204200-86210800 Weak transcription Fetal Heart heart
15 chr11:86204600-86220000 Weak transcription Colonic Mucosa Colon
16 chr11:86206600-86210600 Weak transcription Primary hematopoietic stem cells blood
17 chr11:86206800-86214200 Weak transcription Fetal Muscle Leg muscle
18 chr11:86206800-86214600 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr11:86206800-86214800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr11:86207000-86213400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr11:86208600-86211600 Strong transcription Brain Anterior Caudate brain
22 chr11:86209000-86214400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr11:86209000-86214400 Weak transcription HUVEC blood vessel
24 chr11:86209200-86210800 Weak transcription Pancreas Pancrea
25 chr11:86209200-86211000 Weak transcription Gastric stomach
26 chr11:86209200-86211000 Weak transcription Lung lung
27 chr11:86209200-86211200 Weak transcription Right Atrium heart
28 chr11:86209200-86211800 Weak transcription Fetal Brain Female brain
29 chr11:86209200-86213000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr11:86209200-86213200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr11:86209200-86213400 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr11:86209200-86213400 Weak transcription Adipose Nuclei Adipose
33 chr11:86209200-86213800 Weak transcription Ovary ovary
34 chr11:86209200-86213800 Weak transcription Spleen Spleen
35 chr11:86209200-86214200 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr11:86209200-86214400 Weak transcription Fetal Muscle Trunk muscle
37 chr11:86209200-86214600 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr11:86209200-86214600 Weak transcription Osteobl bone
39 chr11:86209200-86214800 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr11:86209200-86215000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr11:86209200-86216600 Weak transcription Fetal Stomach stomach
42 chr11:86209200-86218800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr11:86209200-86219600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr11:86209200-86221200 Weak transcription NH-A brain
45 chr11:86209200-86223600 Weak transcription Brain Angular Gyrus brain
46 chr11:86209200-86226600 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr11:86209400-86210400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr11:86209400-86210400 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr11:86209400-86210800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr11:86209400-86211000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015