The 2.0 version of rSNPBase

Variant report

Variant rs606546
Chromosome Location chr11:86189792-86189793
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:86159600-86196800 Weak transcription Primary hematopoietic stem cells blood
2 chr11:86160200-86221000 Weak transcription Primary T cells from cord blood blood
3 chr11:86171200-86197800 Weak transcription Esophagus oesophagus
4 chr11:86172200-86208200 Weak transcription Pancreas Pancrea
5 chr11:86172400-86192800 Weak transcription Brain Anterior Caudate brain
6 chr11:86172400-86208400 Weak transcription Brain Angular Gyrus brain
7 chr11:86172400-86227000 Weak transcription Brain Cingulate Gyrus brain
8 chr11:86172600-86194800 Weak transcription Brain Hippocampus Middle brain
9 chr11:86175400-86195400 Weak transcription Brain Germinal Matrix brain
10 chr11:86176600-86197000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr11:86181800-86208800 Weak transcription Gastric stomach
12 chr11:86184400-86190000 Enhancers Stomach Smooth Muscle stomach
13 chr11:86184800-86190600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr11:86185200-86191600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr11:86185600-86193800 Weak transcription Fetal Muscle Trunk muscle
16 chr11:86185800-86191400 Weak transcription NHEK skin
17 chr11:86185800-86195000 Weak transcription Lung lung
18 chr11:86186000-86191400 Weak transcription HMEC breast
19 chr11:86186400-86191200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr11:86186400-86197000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr11:86187200-86189800 Enhancers NHDF-Ad bronchial
22 chr11:86187600-86201200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr11:86187600-86218600 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr11:86187800-86195000 Weak transcription Brain Substantia Nigra brain
25 chr11:86187800-86196000 Weak transcription Fetal Brain Female brain
26 chr11:86187800-86203200 Weak transcription Fetal Heart heart
27 chr11:86188000-86195800 Weak transcription Fetal Intestine Large intestine
28 chr11:86188000-86210400 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr11:86188200-86195400 Weak transcription Fetal Intestine Small intestine
30 chr11:86188600-86189800 Enhancers HUES48 Cell Line embryonic stem cell
31 chr11:86188600-86190400 Enhancers Right Atrium heart
32 chr11:86188600-86190400 Enhancers Right Ventricle heart
33 chr11:86188800-86195000 Weak transcription Fetal Brain Male brain
34 chr11:86189000-86190400 Enhancers HUVEC blood vessel
35 chr11:86189200-86189800 Weak transcription Left Ventricle heart
36 chr11:86189200-86191200 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr11:86189200-86191600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr11:86189200-86191600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr11:86189200-86191800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr11:86189200-86192400 Weak transcription A549 lung
41 chr11:86189200-86194200 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr11:86189200-86194600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr11:86189200-86194800 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr11:86189200-86197400 Weak transcription Fetal Lung lung
45 chr11:86189200-86222600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr11:86189400-86189800 Weak transcription Aorta Aorta
47 chr11:86189400-86191600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr11:86189400-86192000 Weak transcription Fetal Muscle Leg muscle
49 chr11:86189400-86192200 Weak transcription Muscle Satellite Cultured Cells --
50 chr11:86189400-86192200 Weak transcription NHLF lung

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Last update: Aug 31, 2015