The 2.0 version of rSNPBase

Variant report

Variant rs689039
Chromosome Location chr11:86221373-86221374
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:86172400-86227000 Weak transcription Brain Cingulate Gyrus brain
2 chr11:86189200-86222600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr11:86189600-86221600 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr11:86195200-86222200 Weak transcription Rectal Smooth Muscle rectum
5 chr11:86198600-86222800 Weak transcription Esophagus oesophagus
6 chr11:86202800-86226400 Weak transcription Fetal Lung lung
7 chr11:86204000-86222200 Weak transcription Colon Smooth Muscle Colon
8 chr11:86209200-86223600 Weak transcription Brain Angular Gyrus brain
9 chr11:86209200-86226600 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr11:86209400-86221600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr11:86209400-86221600 Weak transcription HSMM muscle
12 chr11:86209600-86221800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr11:86211400-86222800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr11:86211600-86229800 Weak transcription Brain Anterior Caudate brain
15 chr11:86212800-86221600 Weak transcription K562 blood
16 chr11:86214800-86222000 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr11:86215000-86229800 Weak transcription Lung lung
18 chr11:86215200-86221800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr11:86215200-86222400 Weak transcription Ovary ovary
20 chr11:86215200-86222600 Weak transcription Primary hematopoietic stem cells blood
21 chr11:86215200-86223400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr11:86215200-86226400 Weak transcription Spleen Spleen
23 chr11:86215400-86222400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr11:86215400-86222400 Weak transcription Right Ventricle heart
25 chr11:86215400-86223400 Weak transcription Fetal Kidney kidney
26 chr11:86215400-86225000 Weak transcription Psoas Muscle Psoas
27 chr11:86215800-86230000 Weak transcription Fetal Muscle Trunk muscle
28 chr11:86216000-86222600 Weak transcription Primary T killer memory cells from peripheral blood blood
29 chr11:86216800-86222800 Enhancers Fetal Intestine Large intestine
30 chr11:86217200-86221400 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr11:86217200-86223000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr11:86217600-86226600 Weak transcription Aorta Aorta
33 chr11:86218000-86228000 Weak transcription Fetal Brain Female brain
34 chr11:86218200-86227800 Weak transcription Fetal Brain Male brain
35 chr11:86218600-86222000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr11:86218600-86225200 Enhancers Rectal Mucosa Donor 31 rectum
37 chr11:86218600-86226400 Weak transcription Fetal Stomach stomach
38 chr11:86218600-86227800 Weak transcription Stomach Smooth Muscle stomach
39 chr11:86218600-86229600 Weak transcription Brain Germinal Matrix brain
40 chr11:86219000-86222200 Enhancers Fetal Intestine Small intestine
41 chr11:86219000-86222800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr11:86219200-86221400 Enhancers Liver Liver
43 chr11:86219200-86222400 Enhancers HepG2 liver
44 chr11:86219200-86222800 Enhancers HMEC breast
45 chr11:86219200-86223000 Enhancers Muscle Satellite Cultured Cells --
46 chr11:86219200-86223200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr11:86219400-86221400 Enhancers Sigmoid Colon Sigmoid Colon
48 chr11:86219400-86221600 Weak transcription Small Intestine intestine
49 chr11:86219400-86223200 Enhancers Osteobl bone
50 chr11:86219600-86222800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015