Variant report

Variant	rs56009909
Chromosome Location	chr11:86272342-86272343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10466700	1.00[ASN][1000 genomes]
rs10466729	1.00[ASN][1000 genomes]
rs10466730	1.00[ASN][1000 genomes]
rs11234647	1.00[ASN][1000 genomes]
rs11234648	1.00[ASN][1000 genomes]
rs11824889	1.00[ASN][1000 genomes]
rs11828146	1.00[ASN][1000 genomes]
rs11828283	1.00[ASN][1000 genomes]
rs12270471	1.00[ASN][1000 genomes]
rs12270761	1.00[ASN][1000 genomes]
rs12270790	1.00[ASN][1000 genomes]
rs12272259	0.83[ASN][1000 genomes]
rs12276248	1.00[ASN][1000 genomes]
rs12277432	1.00[ASN][1000 genomes]
rs12278247	1.00[ASN][1000 genomes]
rs12280555	1.00[ASN][1000 genomes]
rs12280833	1.00[ASN][1000 genomes]
rs12281645	1.00[ASN][1000 genomes]
rs12283035	1.00[ASN][1000 genomes]
rs12285249	1.00[ASN][1000 genomes]
rs12288560	1.00[ASN][1000 genomes]
rs12289817	1.00[ASN][1000 genomes]
rs12291532	1.00[ASN][1000 genomes]
rs12292316	1.00[ASN][1000 genomes]
rs12293159	1.00[ASN][1000 genomes]
rs12293545	1.00[ASN][1000 genomes]
rs12294756	1.00[ASN][1000 genomes]
rs12804130	1.00[ASN][1000 genomes]
rs12804407	1.00[ASN][1000 genomes]
rs12805940	1.00[ASN][1000 genomes]
rs1452136	1.00[ASN][1000 genomes]
rs1452137	1.00[ASN][1000 genomes]
rs1458381	1.00[ASN][1000 genomes]
rs17149063	1.00[ASN][1000 genomes]
rs17819176	1.00[ASN][1000 genomes]
rs2242142	1.00[ASN][1000 genomes]
rs2279047	1.00[ASN][1000 genomes]
rs34416639	1.00[ASN][1000 genomes]
rs34939684	1.00[ASN][1000 genomes]
rs35686713	1.00[ASN][1000 genomes]
rs3741001	1.00[ASN][1000 genomes]
rs3741002	0.86[ASN][1000 genomes]
rs3741003	1.00[ASN][1000 genomes]
rs3781806	1.00[ASN][1000 genomes]
rs3781813	1.00[ASN][1000 genomes]
rs3824953	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	1.00[ASN][1000 genomes]
rs66872826	1.00[ASN][1000 genomes]
rs7107941	1.00[ASN][1000 genomes]
rs7122296	1.00[ASN][1000 genomes]
rs7122406	1.00[ASN][1000 genomes]
rs7129977	1.00[ASN][1000 genomes]
rs72953614	1.00[ASN][1000 genomes]
rs7932664	1.00[ASN][1000 genomes]
rs7948566	1.00[ASN][1000 genomes]
rs7948764	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86263400-86288200	Weak transcription	Aorta	Aorta
2	chr11:86265000-86278800	Weak transcription	Pancreas	Pancrea
3	chr11:86266400-86278200	Weak transcription	A549	lung
4	chr11:86269800-86272800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:86270400-86276400	Weak transcription	Fetal Brain Female	brain
6	chr11:86270400-86281200	Weak transcription	Colonic Mucosa	Colon
7	chr11:86270600-86276400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:86270800-86272800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:86271000-86276000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:86271000-86276200	Weak transcription	Fetal Stomach	stomach
11	chr11:86271000-86276200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:86271000-86276800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:86271000-86277000	Weak transcription	Lung	lung
14	chr11:86271000-86277800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:86271000-86278000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:86271000-86279600	Weak transcription	Left Ventricle	heart
17	chr11:86271000-86285400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:86271000-86285400	Weak transcription	Right Atrium	heart
19	chr11:86271000-86285600	Weak transcription	Right Ventricle	heart
20	chr11:86271000-86291200	Weak transcription	Gastric	stomach
21	chr11:86271400-86277000	Weak transcription	Ovary	ovary
22	chr11:86272200-86272400	Enhancers	Psoas Muscle	Psoas
23	chr11:86272200-86272600	Enhancers	Fetal Intestine Large	intestine
24	chr11:86272200-86278200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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