Variant report

Variant	rs12280555
Chromosome Location	chr11:86133029-86133030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10466700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466729	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10466730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898503	1.00[CHD][hapmap]
rs11234643	0.86[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs11234647	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234648	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11824889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826066	0.88[TSI][hapmap]
rs11828146	1.00[ASN][1000 genomes]
rs11828283	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12270471	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12270570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270761	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270790	1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272259	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12272318	0.89[AFR][1000 genomes]
rs12273667	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12276248	1.00[ASN][1000 genomes]
rs12277432	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278247	1.00[ASN][1000 genomes]
rs12280833	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12281645	1.00[ASN][1000 genomes]
rs12283035	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285249	1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288560	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12289817	1.00[ASN][1000 genomes]
rs12291532	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292316	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12293159	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293545	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12294756	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804130	1.00[ASN][1000 genomes]
rs12804407	1.00[ASN][1000 genomes]
rs12805940	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs1452136	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452137	1.00[ASN][1000 genomes]
rs1458381	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17149063	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17149064	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17819176	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs2242142	1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279047	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs34416639	1.00[ASN][1000 genomes]
rs34939684	1.00[ASN][1000 genomes]
rs35686713	1.00[ASN][1000 genomes]
rs3741001	1.00[ASN][1000 genomes]
rs3741002	0.86[ASN][1000 genomes]
rs3741003	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs3781806	1.00[ASN][1000 genomes]
rs3781813	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824953	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56009909	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	1.00[ASN][1000 genomes]
rs66872826	1.00[ASN][1000 genomes]
rs7107941	1.00[ASN][1000 genomes]
rs7108053	0.85[JPT][hapmap]
rs7122296	1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122406	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129977	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953614	1.00[ASN][1000 genomes]
rs7932664	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948566	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948764	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12280555	FLJ23514	cis	multi-tissue	Pritchard

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
4	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
6	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86122600-86133400	Weak transcription	Ovary	ovary
9	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
11	chr11:86124800-86136600	Weak transcription	Brain Anterior Caudate	brain
12	chr11:86127800-86133200	Weak transcription	K562	blood
13	chr11:86128200-86133200	Weak transcription	Fetal Intestine Large	intestine
14	chr11:86130400-86134600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:86131400-86142400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:86131600-86133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:86131600-86136000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:86132200-86142200	Weak transcription	Spleen	Spleen
19	chr11:86132600-86134600	Weak transcription	Fetal Lung	lung
20	chr11:86132800-86133800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:86132800-86135000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:86133000-86135400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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