Variant report

Variant	rs10899775
Chromosome Location	chr10:43684714-43684715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43684501..43692416-chr10:43693896..43701465,17	K562	blood:
2	chr10:43682668..43685704-chr10:43685961..43688550,3	MCF-7	breast:
3	chr10:43675338..43678124-chr10:43683546..43685926,2	K562	blood:

Variant related genes	Relation type
ENSG00000198915	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11238443	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238461	0.95[AFR][1000 genomes]
rs11238462	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs11238482	1.00[EUR][1000 genomes]
rs12243788	0.85[AFR][1000 genomes]
rs12244413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12244691	0.85[AFR][1000 genomes]
rs12256246	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257299	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs12266774	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs12570625	0.83[ASN][1000 genomes]
rs12570866	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571683	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377137	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176847	0.81[JPT][hapmap]
rs2503850	0.81[JPT][hapmap]
rs41301585	1.00[ASN][1000 genomes]
rs4285827	0.84[ASN][1000 genomes]
rs61229986	0.84[ASN][1000 genomes]
rs6593509	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs74135446	1.00[EUR][1000 genomes]
rs745689	0.83[YRI][hapmap]
rs7895798	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909755	0.96[AFR][1000 genomes]
rs7913867	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914773	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
2	chr10:43652600-43697200	Weak transcription	Pancreas	Pancrea
3	chr10:43658800-43690600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:43660400-43687400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:43662200-43697600	Weak transcription	NHEK	skin
6	chr10:43662600-43690000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:43667800-43685200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:43667800-43692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:43668000-43685200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:43668200-43694000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:43669600-43689400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:43671000-43689800	Weak transcription	Gastric	stomach
13	chr10:43672200-43690600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:43673600-43686400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:43673800-43684800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:43673800-43685000	Weak transcription	GM12878-XiMat	blood
17	chr10:43673800-43686400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:43674000-43690600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:43674400-43697800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:43675600-43700600	Weak transcription	A549	lung
21	chr10:43675800-43697000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:43676600-43690600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:43676800-43685800	Weak transcription	HUVEC	blood vessel
24	chr10:43677200-43692200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:43677400-43687400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:43678800-43696800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:43679400-43687400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:43679400-43687400	Weak transcription	Fetal Stomach	stomach
29	chr10:43679400-43687400	Weak transcription	NHLF	lung
30	chr10:43679400-43688000	Weak transcription	Spleen	Spleen
31	chr10:43679400-43688200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:43679400-43689800	Weak transcription	Lung	lung
33	chr10:43679400-43690400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:43679400-43692000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:43679400-43692200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:43679400-43693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:43679400-43694800	Weak transcription	Brain Substantia Nigra	brain
38	chr10:43679400-43697400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:43679600-43685600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:43679600-43686400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:43679600-43691800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:43679600-43693200	Weak transcription	Placenta	Placenta
43	chr10:43679800-43686000	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:43679800-43687400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:43679800-43688000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:43679800-43690400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:43680000-43691600	Weak transcription	Brain Angular Gyrus	brain
48	chr10:43680000-43697600	Weak transcription	NH-A	brain
49	chr10:43682000-43697400	Weak transcription	Liver	Liver
50	chr10:43682200-43685600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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