Variant report

Variant	rs7909755
Chromosome Location	chr10:43636945-43636946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:43636876-43637097	GM12878	blood:	n/a	n/a
2	TCF3	chr10:43636853-43637068	GM12878	blood:	n/a	n/a
3	TCF3	chr10:43636914-43637107	GM12878	blood:	n/a	n/a
4	ZNF384	chr10:43636916-43637432	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43634643..43637619-chr10:43638128..43641213,3	K562	blood:

Variant related genes	Relation type
ENSG00000273008	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10899775	0.96[AFR][1000 genomes]
rs11238443	0.93[AFR][1000 genomes]
rs11238457	0.96[AFR][1000 genomes]
rs11238461	0.91[AFR][1000 genomes]
rs11238462	0.81[AFR][1000 genomes]
rs12243788	0.81[AFR][1000 genomes]
rs12244691	0.81[AFR][1000 genomes]
rs12256246	0.96[AFR][1000 genomes]
rs12257299	0.81[AFR][1000 genomes]
rs12266774	0.81[AFR][1000 genomes]
rs13377137	0.96[AFR][1000 genomes]
rs7895798	0.96[AFR][1000 genomes]
rs7913867	0.96[AFR][1000 genomes]
rs7914773	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1038102	chr10:43441601-43642908	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1051701	chr10:43555542-43642895	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43634600-43637200	Weak transcription	Spleen	Spleen
2	chr10:43634600-43637800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:43634800-43641000	Weak transcription	Stomach Mucosa	stomach
4	chr10:43634800-43646800	Weak transcription	Left Ventricle	heart
5	chr10:43634800-43652200	Weak transcription	Gastric	stomach
6	chr10:43635000-43637600	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:43635000-43638000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr10:43635000-43639000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:43635000-43639600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:43635000-43641600	Weak transcription	Psoas Muscle	Psoas
11	chr10:43635200-43637400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:43635200-43637400	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:43635200-43638800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:43635200-43641800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:43635400-43637400	Enhancers	HMEC	breast
16	chr10:43635400-43638400	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:43635400-43639200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:43635400-43639600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:43635400-43641200	Weak transcription	Brain Substantia Nigra	brain
20	chr10:43635400-43642400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:43635400-43644200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:43635400-43655600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:43635600-43637000	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:43635600-43637200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:43635600-43638400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:43635600-43639600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:43635600-43647000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
29	chr10:43635800-43637000	Active TSS	Monocytes-CD14+_RO01746	blood
30	chr10:43635800-43637600	Enhancers	Fetal Thymus	thymus
31	chr10:43635800-43638000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:43635800-43639000	Weak transcription	Fetal Brain Female	brain
33	chr10:43635800-43639600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:43635800-43642000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr10:43636000-43641800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:43636200-43638000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:43636200-43638200	Weak transcription	Brain Angular Gyrus	brain
38	chr10:43636200-43641600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:43636400-43637200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:43636400-43637200	Weak transcription	Fetal Brain Male	brain
41	chr10:43636400-43637200	Weak transcription	Fetal Lung	lung
42	chr10:43636400-43637200	Weak transcription	NHEK	skin
43	chr10:43636400-43637400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr10:43636400-43637400	Enhancers	NHDF-Ad	bronchial
45	chr10:43636400-43637400	Enhancers	Osteobl	bone
46	chr10:43636400-43637600	Enhancers	Primary hematopoietic stem cells	blood
47	chr10:43636400-43638200	Enhancers	Thymus	Thymus
48	chr10:43636400-43639000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:43636400-43640200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr10:43636400-43647000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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