Variant report

Variant	rs13377137
Chromosome Location	chr10:43670731-43670732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43663898..43667538-chr10:43670554..43672479,3	K562	blood:
2	chr10:43662445..43666919-chr10:43668804..43672479,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10899775	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238443	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238461	0.95[AFR][1000 genomes]
rs11238462	0.85[AFR][1000 genomes]
rs11238482	1.00[EUR][1000 genomes]
rs12243788	0.85[AFR][1000 genomes]
rs12244413	0.84[ASN][1000 genomes]
rs12244691	0.85[AFR][1000 genomes]
rs12256246	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257299	0.85[AFR][1000 genomes]
rs12266774	0.85[AFR][1000 genomes]
rs12570625	0.83[ASN][1000 genomes]
rs12570866	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41301585	1.00[ASN][1000 genomes]
rs4285827	0.84[ASN][1000 genomes]
rs61229986	0.84[ASN][1000 genomes]
rs6593509	0.83[AFR][1000 genomes]
rs74135446	1.00[EUR][1000 genomes]
rs7895798	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909755	0.96[AFR][1000 genomes]
rs7913867	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914773	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
2	chr10:43651000-43671800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:43652600-43697200	Weak transcription	Pancreas	Pancrea
4	chr10:43654600-43678000	Weak transcription	Hela-S3	cervix
5	chr10:43655000-43680600	Weak transcription	Colonic Mucosa	Colon
6	chr10:43655800-43673000	Weak transcription	Fetal Kidney	kidney
7	chr10:43656000-43674800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:43656400-43673400	Weak transcription	Psoas Muscle	Psoas
9	chr10:43658600-43671800	Weak transcription	Placenta	Placenta
10	chr10:43658800-43690600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:43659000-43671800	Weak transcription	Fetal Intestine Large	intestine
12	chr10:43659000-43672600	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:43659200-43671400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:43659800-43674800	Weak transcription	A549	lung
15	chr10:43660000-43671800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:43660000-43673000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:43660400-43687400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:43662000-43671800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:43662000-43677000	Strong transcription	Osteobl	bone
20	chr10:43662200-43684400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:43662200-43697600	Weak transcription	NHEK	skin
22	chr10:43662600-43690000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:43662800-43681600	Weak transcription	HMEC	breast
24	chr10:43663000-43678000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:43663600-43679800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:43663600-43683800	Strong transcription	Fetal Thymus	thymus
27	chr10:43663800-43673000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:43663800-43673200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:43664000-43673000	Strong transcription	Primary T cells from cord blood	blood
30	chr10:43664000-43673200	Strong transcription	Primary hematopoietic stem cells	blood
31	chr10:43664000-43679600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr10:43664000-43680400	Strong transcription	Dnd41	blood
33	chr10:43664200-43672400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:43664200-43673200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:43664200-43676800	Strong transcription	HSMMtube	muscle
36	chr10:43664400-43675600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:43664600-43670800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:43664600-43670800	Weak transcription	Fetal Brain Male	brain
39	chr10:43664600-43674800	Weak transcription	Lung	lung
40	chr10:43664800-43671800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:43664800-43675000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:43665200-43671200	Strong transcription	HSMM	muscle
43	chr10:43665200-43680000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:43665400-43679400	Strong transcription	Thymus	Thymus
45	chr10:43665400-43679800	Strong transcription	Adipose Nuclei	Adipose
46	chr10:43665600-43673200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:43665600-43673400	Strong transcription	Fetal Muscle Leg	muscle
48	chr10:43665800-43672800	Strong transcription	Fetal Stomach	stomach
49	chr10:43666400-43671400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:43666600-43673200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links