Variant report

Variant	rs7895798
Chromosome Location	chr10:43661227-43661228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10899775	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238443	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238461	0.95[AFR][1000 genomes]
rs11238462	0.85[AFR][1000 genomes]
rs11238482	1.00[EUR][1000 genomes]
rs12243788	0.85[AFR][1000 genomes]
rs12244413	0.84[ASN][1000 genomes]
rs12244691	0.85[AFR][1000 genomes]
rs12256246	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257299	0.85[AFR][1000 genomes]
rs12266774	0.85[AFR][1000 genomes]
rs12570625	0.83[ASN][1000 genomes]
rs12570866	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377137	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41301585	1.00[ASN][1000 genomes]
rs4285827	0.84[ASN][1000 genomes]
rs61229986	0.84[ASN][1000 genomes]
rs6593509	0.83[AFR][1000 genomes]
rs74135446	1.00[EUR][1000 genomes]
rs7909755	0.96[AFR][1000 genomes]
rs7913867	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914773	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1042310	chr10:43623060-43688505	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43635600-43689000	Weak transcription	Esophagus	oesophagus
2	chr10:43647200-43667800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:43647400-43667800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:43647600-43664000	Weak transcription	Fetal Brain Male	brain
5	chr10:43647600-43667000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:43649200-43661600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:43650400-43667600	Weak transcription	Brain Germinal Matrix	brain
8	chr10:43651000-43671800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:43652400-43668600	Weak transcription	Fetal Heart	heart
10	chr10:43652600-43667800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:43652600-43669800	Weak transcription	Right Ventricle	heart
12	chr10:43652600-43697200	Weak transcription	Pancreas	Pancrea
13	chr10:43653000-43668000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:43653200-43663800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:43653400-43667400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:43654600-43678000	Weak transcription	Hela-S3	cervix
17	chr10:43655000-43680600	Weak transcription	Colonic Mucosa	Colon
18	chr10:43655400-43663000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:43655800-43673000	Weak transcription	Fetal Kidney	kidney
20	chr10:43656000-43667200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:43656000-43667400	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:43656000-43674800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:43656400-43664200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:43656400-43673400	Weak transcription	Psoas Muscle	Psoas
25	chr10:43657000-43661800	Weak transcription	Stomach Mucosa	stomach
26	chr10:43657000-43668000	Weak transcription	Small Intestine	intestine
27	chr10:43657200-43664200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:43657200-43664200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:43657200-43667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:43657200-43667400	Weak transcription	NH-A	brain
31	chr10:43657400-43661600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:43657400-43661800	Weak transcription	HMEC	breast
33	chr10:43657400-43667200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:43657600-43661600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr10:43657600-43664000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:43657800-43662000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:43658000-43669600	Weak transcription	Liver	Liver
38	chr10:43658200-43661400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:43658200-43667800	Weak transcription	Spleen	Spleen
40	chr10:43658200-43670600	Weak transcription	Gastric	stomach
41	chr10:43658400-43661600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:43658400-43664000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:43658400-43667800	Weak transcription	Brain Anterior Caudate	brain
44	chr10:43658400-43669600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:43658600-43661600	Weak transcription	Thymus	Thymus
46	chr10:43658600-43671800	Weak transcription	Placenta	Placenta
47	chr10:43658800-43668000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:43658800-43690600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:43659000-43667400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:43659000-43667800	Weak transcription	Brain Angular Gyrus	brain

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