Variant report

Variant	rs10908664
Chromosome Location	chr1:158492629-158492630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1032352	0.98[ASN][1000 genomes]
rs10797010	0.93[ASN][1000 genomes]
rs10797011	0.96[ASN][1000 genomes]
rs10797012	0.96[ASN][1000 genomes]
rs10797013	0.96[ASN][1000 genomes]
rs10797022	0.98[ASN][1000 genomes]
rs10797023	0.98[ASN][1000 genomes]
rs10797024	0.98[ASN][1000 genomes]
rs10908651	0.93[ASN][1000 genomes]
rs10908652	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10908653	0.93[ASN][1000 genomes]
rs10908654	0.91[ASN][1000 genomes]
rs10908655	0.94[ASN][1000 genomes]
rs10908656	0.94[ASN][1000 genomes]
rs10908657	0.96[ASN][1000 genomes]
rs10908658	0.96[ASN][1000 genomes]
rs10908659	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10908660	0.96[ASN][1000 genomes]
rs10908661	0.96[ASN][1000 genomes]
rs10908663	0.98[ASN][1000 genomes]
rs1112915	0.93[ASN][1000 genomes]
rs11264976	0.91[ASN][1000 genomes]
rs11264977	0.92[ASN][1000 genomes]
rs11264978	0.93[ASN][1000 genomes]
rs11264981	0.93[ASN][1000 genomes]
rs11264983	0.94[ASN][1000 genomes]
rs11264984	0.96[ASN][1000 genomes]
rs11264985	0.96[ASN][1000 genomes]
rs11264987	0.96[ASN][1000 genomes]
rs11264988	0.96[ASN][1000 genomes]
rs11264994	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264997	0.96[ASN][1000 genomes]
rs1157523	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1157525	0.93[ASN][1000 genomes]
rs12034004	0.96[ASN][1000 genomes]
rs12044283	0.96[ASN][1000 genomes]
rs12044288	0.96[ASN][1000 genomes]
rs12075903	0.94[ASN][1000 genomes]
rs12078065	0.96[ASN][1000 genomes]
rs12080815	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12081915	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12118446	0.98[ASN][1000 genomes]
rs12122663	0.96[ASN][1000 genomes]
rs12133791	0.96[ASN][1000 genomes]
rs12133794	0.96[ASN][1000 genomes]
rs12145401	0.98[ASN][1000 genomes]
rs12403685	0.93[ASN][1000 genomes]
rs1342946	0.93[ASN][1000 genomes]
rs1342947	0.95[ASN][1000 genomes]
rs1342949	0.85[ASN][1000 genomes]
rs1342950	0.96[ASN][1000 genomes]
rs1342952	0.96[ASN][1000 genomes]
rs1342953	0.96[ASN][1000 genomes]
rs1342954	0.96[ASN][1000 genomes]
rs1418843	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1418844	0.91[ASN][1000 genomes]
rs1418845	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418846	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418847	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1491196	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1578761	0.98[ASN][1000 genomes]
rs1578762	0.98[ASN][1000 genomes]
rs1578763	0.98[ASN][1000 genomes]
rs17630699	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1873509	0.94[ASN][1000 genomes]
rs1873510	0.94[ASN][1000 genomes]
rs1873511	0.94[ASN][1000 genomes]
rs1894038	0.93[ASN][1000 genomes]
rs1894040	0.93[ASN][1000 genomes]
rs2023632	0.94[ASN][1000 genomes]
rs2051450	0.94[ASN][1000 genomes]
rs2051451	0.96[ASN][1000 genomes]
rs2157687	0.98[ASN][1000 genomes]
rs2157689	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2213947	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2220633	0.93[ASN][1000 genomes]
rs2317969	0.98[ASN][1000 genomes]
rs2317970	0.96[ASN][1000 genomes]
rs2873593	0.96[ASN][1000 genomes]
rs2873594	0.96[ASN][1000 genomes]
rs2873595	0.96[ASN][1000 genomes]
rs4276920	0.96[ASN][1000 genomes]
rs4373761	0.96[ASN][1000 genomes]
rs4575081	0.96[ASN][1000 genomes]
rs4609418	0.96[ASN][1000 genomes]
rs4614256	0.96[ASN][1000 genomes]
rs57366633	0.93[ASN][1000 genomes]
rs6427438	0.93[ASN][1000 genomes]
rs6427439	0.94[ASN][1000 genomes]
rs6657638	0.98[ASN][1000 genomes]
rs6663277	0.98[ASN][1000 genomes]
rs6664542	0.94[ASN][1000 genomes]
rs6666609	0.98[ASN][1000 genomes]
rs6670343	0.98[ASN][1000 genomes]
rs6672789	0.98[ASN][1000 genomes]
rs6674656	0.98[ASN][1000 genomes]
rs6679056	0.93[ASN][1000 genomes]
rs6689657	0.94[ASN][1000 genomes]
rs6697656	0.88[ASN][1000 genomes]
rs6699473	0.98[ASN][1000 genomes]
rs7514555	0.93[ASN][1000 genomes]
rs7514968	0.98[ASN][1000 genomes]
rs7515245	0.98[ASN][1000 genomes]
rs7518708	0.96[ASN][1000 genomes]
rs7518808	0.98[ASN][1000 genomes]
rs7525362	0.98[ASN][1000 genomes]
rs7526514	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7533071	0.96[ASN][1000 genomes]
rs7540999	0.96[ASN][1000 genomes]
rs7548349	0.98[ASN][1000 genomes]
rs7549123	0.93[ASN][1000 genomes]
rs7551497	0.93[ASN][1000 genomes]
rs7555174	0.96[ASN][1000 genomes]
rs863345	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863346	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863347	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863351	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863352	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863353	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863356	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs879635	0.94[ASN][1000 genomes]
rs879637	0.94[ASN][1000 genomes]
rs923663	0.96[ASN][1000 genomes]
rs923664	0.96[ASN][1000 genomes]
rs949397	0.94[ASN][1000 genomes]
rs949398	0.94[ASN][1000 genomes]
rs950260	0.98[ASN][1000 genomes]
rs950487	0.94[ASN][1000 genomes]
rs9804005	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv437202	chr1:158484378-158493154	Weak transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv547982	chr1:158489945-158511445	Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158491800-158496800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:158491800-158497400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:158492000-158497200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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