Variant report

Variant	rs863346
Chromosome Location	chr1:158535911-158535912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1032352	0.86[ASN][1000 genomes]
rs10797010	0.84[ASN][1000 genomes]
rs10797011	0.84[ASN][1000 genomes]
rs10797012	0.84[ASN][1000 genomes]
rs10797013	0.84[ASN][1000 genomes]
rs10797022	0.86[ASN][1000 genomes]
rs10797023	0.86[ASN][1000 genomes]
rs10797024	0.86[ASN][1000 genomes]
rs10908651	0.84[ASN][1000 genomes]
rs10908652	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10908653	0.84[ASN][1000 genomes]
rs10908654	0.83[ASN][1000 genomes]
rs10908655	0.86[ASN][1000 genomes]
rs10908656	0.86[ASN][1000 genomes]
rs10908657	0.84[ASN][1000 genomes]
rs10908658	0.84[ASN][1000 genomes]
rs10908659	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10908660	0.84[ASN][1000 genomes]
rs10908661	0.84[ASN][1000 genomes]
rs10908663	0.86[ASN][1000 genomes]
rs10908664	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1112915	0.84[ASN][1000 genomes]
rs11264976	0.82[ASN][1000 genomes]
rs11264977	0.84[ASN][1000 genomes]
rs11264978	0.84[ASN][1000 genomes]
rs11264981	0.84[ASN][1000 genomes]
rs11264983	0.86[ASN][1000 genomes]
rs11264984	0.84[ASN][1000 genomes]
rs11264985	0.84[ASN][1000 genomes]
rs11264987	0.84[ASN][1000 genomes]
rs11264988	0.84[ASN][1000 genomes]
rs11264994	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11264997	0.85[ASN][1000 genomes]
rs1157523	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1157525	0.84[ASN][1000 genomes]
rs12034004	0.84[ASN][1000 genomes]
rs12044283	0.84[ASN][1000 genomes]
rs12044288	0.84[ASN][1000 genomes]
rs12075903	0.86[ASN][1000 genomes]
rs12078065	0.84[ASN][1000 genomes]
rs12080815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12081915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12118446	0.86[ASN][1000 genomes]
rs12122663	0.88[ASN][1000 genomes]
rs12133791	0.88[ASN][1000 genomes]
rs12133794	0.88[ASN][1000 genomes]
rs12145401	0.86[ASN][1000 genomes]
rs12403685	0.84[ASN][1000 genomes]
rs1342946	0.84[ASN][1000 genomes]
rs1342947	0.85[ASN][1000 genomes]
rs1342950	0.84[ASN][1000 genomes]
rs1342952	0.84[ASN][1000 genomes]
rs1342953	0.84[ASN][1000 genomes]
rs1342954	0.84[ASN][1000 genomes]
rs1418843	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1418844	0.83[ASN][1000 genomes]
rs1418845	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1418846	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1418847	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1491196	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1578761	0.86[ASN][1000 genomes]
rs1578762	0.86[ASN][1000 genomes]
rs1578763	0.86[ASN][1000 genomes]
rs17630699	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1873509	0.86[ASN][1000 genomes]
rs1873510	0.86[ASN][1000 genomes]
rs1873511	0.86[ASN][1000 genomes]
rs1894038	0.84[ASN][1000 genomes]
rs1894040	0.84[ASN][1000 genomes]
rs2023632	0.86[ASN][1000 genomes]
rs2051450	0.83[ASN][1000 genomes]
rs2051451	0.84[ASN][1000 genomes]
rs2157687	0.86[ASN][1000 genomes]
rs2157689	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2213947	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2220633	0.84[ASN][1000 genomes]
rs2317969	0.86[ASN][1000 genomes]
rs2317970	0.88[ASN][1000 genomes]
rs2873593	0.88[ASN][1000 genomes]
rs2873594	0.88[ASN][1000 genomes]
rs2873595	0.88[ASN][1000 genomes]
rs4276920	0.88[ASN][1000 genomes]
rs4373761	0.84[ASN][1000 genomes]
rs4575081	0.88[ASN][1000 genomes]
rs4609418	0.84[ASN][1000 genomes]
rs4614256	0.84[ASN][1000 genomes]
rs57366633	0.84[ASN][1000 genomes]
rs6427438	0.84[ASN][1000 genomes]
rs6427439	0.86[ASN][1000 genomes]
rs6657638	0.86[ASN][1000 genomes]
rs6663277	0.86[ASN][1000 genomes]
rs6664542	0.86[ASN][1000 genomes]
rs6666609	0.86[ASN][1000 genomes]
rs6670343	0.86[ASN][1000 genomes]
rs6672789	0.86[ASN][1000 genomes]
rs6674656	0.86[ASN][1000 genomes]
rs6679056	0.84[ASN][1000 genomes]
rs6689657	0.86[ASN][1000 genomes]
rs6697656	0.96[ASN][1000 genomes]
rs6699473	0.86[ASN][1000 genomes]
rs7514555	0.84[ASN][1000 genomes]
rs7514968	0.86[ASN][1000 genomes]
rs7515245	0.86[ASN][1000 genomes]
rs7518708	0.88[ASN][1000 genomes]
rs7518808	0.86[ASN][1000 genomes]
rs7525362	0.86[ASN][1000 genomes]
rs7526514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7533071	0.88[ASN][1000 genomes]
rs7540999	0.88[ASN][1000 genomes]
rs7548349	0.86[ASN][1000 genomes]
rs7549123	0.84[ASN][1000 genomes]
rs7551497	0.84[ASN][1000 genomes]
rs7555174	0.85[ASN][1000 genomes]
rs863345	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863347	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863351	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863352	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863353	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863356	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879635	0.86[ASN][1000 genomes]
rs879637	0.86[ASN][1000 genomes]
rs923663	0.88[ASN][1000 genomes]
rs923664	0.88[ASN][1000 genomes]
rs949397	0.86[ASN][1000 genomes]
rs949398	0.86[ASN][1000 genomes]
rs950260	0.86[ASN][1000 genomes]
rs950487	0.86[ASN][1000 genomes]
rs9804005	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013656	chr1:158516984-158542929	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1015106	chr1:158516984-158545423	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv547986	chr1:158520205-158556839	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158535000-158539200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links