Variant report

Variant	rs12403685
Chromosome Location	chr1:158452399-158452400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs1002599	0.85[CHB][hapmap]
rs1032352	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489833	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap]
rs10489834	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs10489835	0.95[CHB][hapmap];0.85[CHD][hapmap]
rs10797010	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797011	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10797012	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10797013	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10797020	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap]
rs10797022	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10797023	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10797024	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10908651	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908652	1.00[ASN][1000 genomes]
rs10908653	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908654	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10908655	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10908656	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10908657	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10908658	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10908659	0.97[ASN][1000 genomes]
rs10908660	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10908661	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10908663	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10908664	0.93[ASN][1000 genomes]
rs10908680	0.95[CHB][hapmap]
rs1112915	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264976	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264977	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11264978	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264981	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264983	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11264984	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264985	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264987	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264988	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264989	0.81[CHB][hapmap]
rs11264994	0.94[ASN][1000 genomes]
rs11264997	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11264998	0.95[CHB][hapmap];0.90[CHD][hapmap]
rs11265002	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs11265003	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs1157523	1.00[ASN][1000 genomes]
rs1157525	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034004	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12041218	0.95[CHB][hapmap]
rs12044283	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12044288	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12075903	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12078065	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12080815	0.90[CHB][hapmap];0.80[CHD][hapmap];0.85[ASN][1000 genomes]
rs12081915	0.90[CHB][hapmap];0.83[CHD][hapmap];0.85[ASN][1000 genomes]
rs12118446	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12122663	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12133791	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12133794	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12145401	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12601	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1342946	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342947	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1342949	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1342950	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342952	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342953	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342954	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342958	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs1418843	1.00[ASN][1000 genomes]
rs1418844	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418845	0.96[ASN][1000 genomes]
rs1418846	0.95[CHB][hapmap];0.90[CHD][hapmap];0.96[ASN][1000 genomes]
rs1418847	0.95[CHB][hapmap];0.90[CHD][hapmap];0.96[ASN][1000 genomes]
rs1491196	0.93[ASN][1000 genomes]
rs1557615	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1573519	0.86[CHB][hapmap];0.86[GIH][hapmap]
rs1578761	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1578762	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1578763	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17630699	0.99[ASN][1000 genomes]
rs1873509	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1873510	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1873511	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894038	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894040	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023632	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2051450	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2051451	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157687	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2157689	0.99[ASN][1000 genomes]
rs2188111	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs2213947	1.00[ASN][1000 genomes]
rs2220633	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251969	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2317969	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2317970	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2479867	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2852636	0.80[EUR][1000 genomes]
rs2873593	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2873594	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2873595	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4276920	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4373761	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575081	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4609418	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4614256	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4657080	0.86[CHB][hapmap]
rs57366633	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6427438	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427439	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6657638	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6663277	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6664542	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6666609	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6670343	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6672789	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6674656	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6679056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689657	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6697656	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6699473	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7512592	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap]
rs7514555	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514968	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7515245	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7518708	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7518808	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7525362	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526514	0.85[ASN][1000 genomes]
rs7533071	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7540999	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7548349	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7549123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549581	0.95[CEU][hapmap];0.94[CHB][hapmap]
rs7551497	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555174	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs857676	0.84[CEU][hapmap]
rs857687	0.81[EUR][1000 genomes]
rs857716	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs857723	0.84[CEU][hapmap]
rs857724	0.84[CEU][hapmap]
rs863345	0.90[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs863346	0.84[ASN][1000 genomes]
rs863347	0.90[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs863351	0.90[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs863352	0.90[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs863353	0.84[ASN][1000 genomes]
rs863356	0.84[ASN][1000 genomes]
rs863365	0.90[CHB][hapmap]
rs863931	0.84[CEU][hapmap]
rs879635	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs879637	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs923663	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs923664	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs949397	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949398	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs950260	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs950487	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952094	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs9651046	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs9804005	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158444200-158456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:158451400-158453400	Weak transcription	Fetal Thymus	thymus
3	chr1:158451600-158453400	Weak transcription	Thymus	Thymus
4	chr1:158452000-158453400	Weak transcription	Dnd41	blood

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