Variant report

Variant	rs9804005
Chromosome Location	chr1:158520414-158520415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:158520227-158520427	HepG2	liver:	n/a	chr1:158520329-158520345 chr1:158520330-158520341 chr1:158520328-158520342 chr1:158520329-158520340 chr1:158520329-158520340
2	MAFF	chr1:158520260-158520451	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
OR6Y1	TF binding region

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1032352	0.90[ASN][1000 genomes]
rs10797010	0.88[ASN][1000 genomes]
rs10797011	0.88[ASN][1000 genomes]
rs10797012	0.88[ASN][1000 genomes]
rs10797013	0.88[ASN][1000 genomes]
rs10797022	0.90[ASN][1000 genomes]
rs10797023	0.90[ASN][1000 genomes]
rs10797024	0.90[ASN][1000 genomes]
rs10908651	0.88[ASN][1000 genomes]
rs10908652	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10908653	0.88[ASN][1000 genomes]
rs10908654	0.87[ASN][1000 genomes]
rs10908655	0.89[ASN][1000 genomes]
rs10908656	0.89[ASN][1000 genomes]
rs10908657	0.88[ASN][1000 genomes]
rs10908658	0.88[ASN][1000 genomes]
rs10908659	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10908660	0.88[ASN][1000 genomes]
rs10908661	0.88[ASN][1000 genomes]
rs10908663	0.90[ASN][1000 genomes]
rs10908664	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1112915	0.88[ASN][1000 genomes]
rs11264976	0.86[ASN][1000 genomes]
rs11264977	0.87[ASN][1000 genomes]
rs11264978	0.88[ASN][1000 genomes]
rs11264981	0.88[ASN][1000 genomes]
rs11264983	0.89[ASN][1000 genomes]
rs11264984	0.88[ASN][1000 genomes]
rs11264985	0.88[ASN][1000 genomes]
rs11264987	0.88[ASN][1000 genomes]
rs11264988	0.88[ASN][1000 genomes]
rs11264994	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11264997	0.89[ASN][1000 genomes]
rs1157523	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1157525	0.88[ASN][1000 genomes]
rs12034004	0.88[ASN][1000 genomes]
rs12044283	0.88[ASN][1000 genomes]
rs12044288	0.88[ASN][1000 genomes]
rs12075903	0.89[ASN][1000 genomes]
rs12078065	0.88[ASN][1000 genomes]
rs12080815	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12081915	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12118446	0.90[ASN][1000 genomes]
rs12122663	0.91[ASN][1000 genomes]
rs12133791	0.91[ASN][1000 genomes]
rs12133794	0.91[ASN][1000 genomes]
rs12145401	0.90[ASN][1000 genomes]
rs12403685	0.88[ASN][1000 genomes]
rs1342946	0.88[ASN][1000 genomes]
rs1342947	0.89[ASN][1000 genomes]
rs1342949	0.81[ASN][1000 genomes]
rs1342950	0.88[ASN][1000 genomes]
rs1342952	0.88[ASN][1000 genomes]
rs1342953	0.88[ASN][1000 genomes]
rs1342954	0.88[ASN][1000 genomes]
rs1418843	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418844	0.87[ASN][1000 genomes]
rs1418845	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418846	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418847	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1491196	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1578761	0.90[ASN][1000 genomes]
rs1578762	0.90[ASN][1000 genomes]
rs1578763	0.90[ASN][1000 genomes]
rs17630699	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1873509	0.89[ASN][1000 genomes]
rs1873510	0.89[ASN][1000 genomes]
rs1873511	0.89[ASN][1000 genomes]
rs1894038	0.88[ASN][1000 genomes]
rs1894040	0.88[ASN][1000 genomes]
rs2023632	0.89[ASN][1000 genomes]
rs2051450	0.86[ASN][1000 genomes]
rs2051451	0.88[ASN][1000 genomes]
rs2157687	0.90[ASN][1000 genomes]
rs2157689	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2213947	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2220633	0.88[ASN][1000 genomes]
rs2317969	0.90[ASN][1000 genomes]
rs2317970	0.91[ASN][1000 genomes]
rs2873593	0.91[ASN][1000 genomes]
rs2873594	0.91[ASN][1000 genomes]
rs2873595	0.91[ASN][1000 genomes]
rs4276920	0.91[ASN][1000 genomes]
rs4373761	0.88[ASN][1000 genomes]
rs4575081	0.91[ASN][1000 genomes]
rs4609418	0.88[ASN][1000 genomes]
rs4614256	0.88[ASN][1000 genomes]
rs57366633	0.88[ASN][1000 genomes]
rs6427438	0.88[ASN][1000 genomes]
rs6427439	0.89[ASN][1000 genomes]
rs6657638	0.90[ASN][1000 genomes]
rs6663277	0.90[ASN][1000 genomes]
rs6664542	0.89[ASN][1000 genomes]
rs6666609	0.90[ASN][1000 genomes]
rs6670343	0.90[ASN][1000 genomes]
rs6672789	0.90[ASN][1000 genomes]
rs6674656	0.90[ASN][1000 genomes]
rs6679056	0.88[ASN][1000 genomes]
rs6689657	0.89[ASN][1000 genomes]
rs6697656	1.00[ASN][1000 genomes]
rs6699473	0.90[ASN][1000 genomes]
rs7514555	0.88[ASN][1000 genomes]
rs7514968	0.90[ASN][1000 genomes]
rs7515245	0.90[ASN][1000 genomes]
rs7518708	0.91[ASN][1000 genomes]
rs7518808	0.90[ASN][1000 genomes]
rs7525362	0.90[ASN][1000 genomes]
rs7526514	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7533071	0.91[ASN][1000 genomes]
rs7540999	0.91[ASN][1000 genomes]
rs7548349	0.90[ASN][1000 genomes]
rs7549123	0.88[ASN][1000 genomes]
rs7551497	0.88[ASN][1000 genomes]
rs7555174	0.89[ASN][1000 genomes]
rs863345	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863346	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863347	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863351	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863352	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863353	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863356	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs879635	0.89[ASN][1000 genomes]
rs879637	0.89[ASN][1000 genomes]
rs923663	0.91[ASN][1000 genomes]
rs923664	0.91[ASN][1000 genomes]
rs949397	0.89[ASN][1000 genomes]
rs949398	0.89[ASN][1000 genomes]
rs950260	0.90[ASN][1000 genomes]
rs950487	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv547983	chr1:158495464-158523671	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437248	chr1:158511445-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv437249	chr1:158513048-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv437250	chr1:158513048-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2764188	chr1:158513048-158527524	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998666	chr1:158514881-158525623	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1005658	chr1:158514881-158526572	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3452526	chr1:158516603-158521879	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3452527	chr1:158516618-158521888	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3452528	chr1:158516668-158521840	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3452529	chr1:158516668-158521840	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2422163	chr1:158516836-158521392	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3692924	chr1:158516836-158523671	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1013656	chr1:158516984-158542929	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1015106	chr1:158516984-158545423	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1833445	chr1:158516996-158520417	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	nsv442095	chr1:158516996-158520417	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	nsv515774	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	nsv464117	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	nsv464128	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv547984	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
23	nsv464139	chr1:158520205-158521034	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
24	nsv547985	chr1:158520205-158521034	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
25	nsv547986	chr1:158520205-158556839	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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