Variant report

Variant	rs10912954
Chromosome Location	chr1:175276007-175276008
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11484650	1.00[AMR][1000 genomes]
rs12059472	1.00[AMR][1000 genomes]
rs12062749	1.00[AMR][1000 genomes]
rs12069951	1.00[AMR][1000 genomes]
rs12071778	1.00[AMR][1000 genomes]
rs28370405	1.00[AMR][1000 genomes]
rs28455094	1.00[AMR][1000 genomes]
rs60033655	1.00[AMR][1000 genomes]
rs73038915	1.00[AMR][1000 genomes]
rs73041898	1.00[AMR][1000 genomes]
rs73046101	1.00[AMR][1000 genomes]
rs73047918	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175275000-175276400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:175275000-175277600	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:175275200-175277600	Enhancers	Placenta	Placenta
4	chr1:175275200-175278400	Enhancers	Primary B cells from cord blood	blood
5	chr1:175276000-175276600	Enhancers	Thymus	Thymus
6	chr1:175276000-175276600	Flanking Active TSS	GM12878-XiMat	blood
7	chr1:175276000-175277200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:175276000-175279400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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