Variant report

Variant	rs28455094
Chromosome Location	chr1:175241089-175241090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10912954	1.00[AMR][1000 genomes]
rs11484650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062749	1.00[AMR][1000 genomes]
rs12069951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071778	1.00[AMR][1000 genomes]
rs28370405	1.00[AMR][1000 genomes]
rs60033655	1.00[AMR][1000 genomes]
rs73038915	1.00[AMR][1000 genomes]
rs73041898	1.00[AMR][1000 genomes]
rs73046101	1.00[AMR][1000 genomes]
rs73047918	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175235800-175241800	Enhancers	Placenta	Placenta
2	chr1:175236600-175242400	Weak transcription	Right Atrium	heart
3	chr1:175238400-175242800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:175238600-175241800	Weak transcription	Adipose Nuclei	Adipose
5	chr1:175238600-175242600	Weak transcription	Psoas Muscle	Psoas
6	chr1:175238800-175241800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:175239200-175242600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:175239800-175241600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:175240400-175241400	Weak transcription	Hela-S3	cervix
10	chr1:175240800-175241200	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links