Variant report

Variant	rs12062749
Chromosome Location	chr1:175183921-175183922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10912954	1.00[AMR][1000 genomes]
rs11484650	1.00[AMR][1000 genomes]
rs12059472	1.00[AMR][1000 genomes]
rs12069951	1.00[AMR][1000 genomes]
rs12071778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370405	1.00[AMR][1000 genomes]
rs28455094	1.00[AMR][1000 genomes]
rs60033655	1.00[AMR][1000 genomes]
rs73038915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041898	1.00[AMR][1000 genomes]
rs73046101	1.00[AMR][1000 genomes]
rs73047918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175178400-175191400	Weak transcription	Spleen	Spleen
2	chr1:175181200-175186800	Weak transcription	Fetal Thymus	thymus
3	chr1:175181600-175185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:175181800-175185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:175181800-175185200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:175182000-175186400	Weak transcription	Primary B cells from cord blood	blood
7	chr1:175182400-175187800	Weak transcription	Primary T cells from cord blood	blood
8	chr1:175182600-175188200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:175183000-175186800	Weak transcription	Psoas Muscle	Psoas
10	chr1:175183800-175184200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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