Variant report

Variant	rs12071778
Chromosome Location	chr1:175175193-175175194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175174804..175177304-chr1:175177311..175180310,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10912954	1.00[AMR][1000 genomes]
rs11484650	1.00[AMR][1000 genomes]
rs12059472	1.00[AMR][1000 genomes]
rs12062749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069951	1.00[AMR][1000 genomes]
rs28370405	1.00[AMR][1000 genomes]
rs28455094	1.00[AMR][1000 genomes]
rs60033655	1.00[AMR][1000 genomes]
rs73038915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041898	1.00[AMR][1000 genomes]
rs73046101	1.00[AMR][1000 genomes]
rs73047918	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175162600-175178000	Weak transcription	Psoas Muscle	Psoas
2	chr1:175167200-175175600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:175167200-175175800	Weak transcription	Primary T cells from cord blood	blood
4	chr1:175167800-175175600	Weak transcription	Hela-S3	cervix
5	chr1:175167800-175175800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:175170600-175177800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:175170800-175175400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:175170800-175176000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:175171000-175177000	Weak transcription	Fetal Thymus	thymus
10	chr1:175171200-175175400	Weak transcription	HUVEC	blood vessel
11	chr1:175171200-175177200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:175171400-175175600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:175174000-175175400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:175174000-175175600	Weak transcription	HMEC	breast
15	chr1:175174000-175175600	Weak transcription	NHEK	skin
16	chr1:175174000-175175800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:175174000-175175800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:175174000-175177000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr1:175174000-175177200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:175174000-175178000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:175174000-175178000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr1:175174000-175178000	Weak transcription	Spleen	Spleen
23	chr1:175174000-175178400	Weak transcription	Right Atrium	heart
24	chr1:175174200-175175400	Weak transcription	Adipose Nuclei	Adipose
25	chr1:175174200-175175800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:175174200-175175800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr1:175174200-175176000	Weak transcription	Primary B cells from cord blood	blood
28	chr1:175174200-175176000	Weak transcription	Thymus	Thymus
29	chr1:175174200-175177200	Weak transcription	GM12878-XiMat	blood
30	chr1:175174200-175178000	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:175174800-175178000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr1:175175000-175178000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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