Variant report

Variant	rs10918307
Chromosome Location	chr1:165871019-165871020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165864751..165867551-chr1:165869428..165872327,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1061771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1061772	0.99[AFR][1000 genomes]
rs12084653	0.82[ASW][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs12090859	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1663840	1.00[EUR][1000 genomes]
rs16852574	0.88[AFR][1000 genomes]
rs2153261	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs2153262	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs2185267	1.00[EUR][1000 genomes]
rs2275432	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349108	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2349109	1.00[ASN][1000 genomes]
rs3748701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790658	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790660	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790661	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790673	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806332	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61057126	0.96[AFR][1000 genomes]
rs6666697	1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681761	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73031410	0.96[AFR][1000 genomes]
rs73031470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165854600-165883000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:165856600-165878800	Weak transcription	Small Intestine	intestine
3	chr1:165858200-165881200	Strong transcription	Dnd41	blood
4	chr1:165858400-165881000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:165858600-165872000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:165858600-165872600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:165859000-165881000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:165859200-165871200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:165859200-165878000	Strong transcription	Hela-S3	cervix
11	chr1:165859200-165880400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:165859200-165881000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:165859400-165871200	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr1:165859400-165880200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr1:165859400-165880400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr1:165859400-165880600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:165859400-165880600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:165859600-165880600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:165860000-165880200	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr1:165862000-165871800	Weak transcription	Brain Substantia Nigra	brain
21	chr1:165862400-165871800	Weak transcription	Brain Anterior Caudate	brain
22	chr1:165864600-165872000	Weak transcription	Primary B cells from cord blood	blood
23	chr1:165865000-165872600	Weak transcription	Adipose Nuclei	Adipose
24	chr1:165866000-165871800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:165866400-165875000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:165866600-165871400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:165866600-165871800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:165866800-165872000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:165866800-165872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:165866800-165872200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:165867000-165871800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:165867000-165872800	Enhancers	HUVEC	blood vessel
33	chr1:165867200-165876800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:165867400-165872400	Weak transcription	Colonic Mucosa	Colon
35	chr1:165867800-165871200	Enhancers	Stomach Mucosa	stomach
36	chr1:165867800-165876600	Weak transcription	Psoas Muscle	Psoas
37	chr1:165868200-165871800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:165868400-165872000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr1:165868400-165880200	Strong transcription	A549	lung
40	chr1:165869000-165875200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:165869200-165872200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:165869200-165875000	Weak transcription	GM12878-XiMat	blood
43	chr1:165869200-165875200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:165869200-165875400	Weak transcription	Brain Germinal Matrix	brain
45	chr1:165869400-165872400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:165869600-165872000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:165869800-165874600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:165870000-165872000	Weak transcription	Left Ventricle	heart
49	chr1:165870000-165872000	Weak transcription	K562	blood
50	chr1:165870000-165872200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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