Variant report

Variant	rs577133
Chromosome Location	chr1:165881975-165881976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165599377..165602335-chr1:165879611..165882168,3	MCF-7	breast:
2	chr1:165876437..165878779-chr1:165881882..165884528,2	K562	blood:
3	chr1:165567537..165571496-chr1:165881949..165885234,3	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction
ENSG00000236206	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1061771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1663840	1.00[EUR][1000 genomes]
rs2153261	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153262	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2185267	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2275432	1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2349109	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3748701	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790656	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790657	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790662	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790663	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790664	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790667	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790673	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806331	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806332	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512542	1.00[YRI][hapmap]
rs6666697	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693108	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73031470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165854600-165883000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:165870200-165882800	Weak transcription	Fetal Brain Male	brain
4	chr1:165871000-165883200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:165871800-165882200	Strong transcription	Fetal Brain Female	brain
6	chr1:165872400-165883200	Weak transcription	Brain Anterior Caudate	brain
7	chr1:165872400-165883200	Weak transcription	Brain Substantia Nigra	brain
8	chr1:165872800-165883400	Weak transcription	Fetal Kidney	kidney
9	chr1:165875800-165883400	Weak transcription	Fetal Lung	lung
10	chr1:165876000-165883400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:165876400-165884200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:165877000-165882000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:165877000-165882200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:165877000-165883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:165877200-165883400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:165878000-165883000	Weak transcription	Hela-S3	cervix
17	chr1:165878000-165883600	Weak transcription	Thymus	Thymus
18	chr1:165878600-165883000	Weak transcription	NHDF-Ad	bronchial
19	chr1:165878600-165883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:165879200-165883000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:165879200-165886200	Enhancers	Stomach Mucosa	stomach
22	chr1:165879400-165884400	Weak transcription	Pancreas	Pancrea
23	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
24	chr1:165879600-165883000	Weak transcription	Psoas Muscle	Psoas
25	chr1:165879800-165882000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:165879800-165883000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:165879800-165883200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:165879800-165883200	Weak transcription	K562	blood
29	chr1:165879800-165883800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:165879800-165885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:165880000-165882200	Enhancers	Esophagus	oesophagus
32	chr1:165880000-165882800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:165880000-165883000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:165880000-165883400	Weak transcription	NH-A	brain
35	chr1:165880000-165885200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:165880000-165888400	Weak transcription	Spleen	Spleen
37	chr1:165880200-165882200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:165880200-165882200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr1:165880200-165882400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr1:165880200-165883200	Weak transcription	A549	lung
41	chr1:165880200-165883200	Weak transcription	HMEC	breast
42	chr1:165880400-165882000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:165880400-165882000	Enhancers	Fetal Intestine Large	intestine
44	chr1:165880400-165883000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:165880400-165883200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr1:165880400-165883600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr1:165880400-165883800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:165880600-165883000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:165880600-165883200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:165880600-165883200	Weak transcription	NHEK	skin

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