Variant report

Variant	rs3748701
Chromosome Location	chr1:165879891-165879892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165599377..165602335-chr1:165879611..165882168,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1061771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1663840	1.00[EUR][1000 genomes]
rs2153261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2153262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2185267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2275432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349108	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2349109	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3790656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790662	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790663	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577133	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73031470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165854600-165883000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:165858200-165881200	Strong transcription	Dnd41	blood
3	chr1:165858400-165881000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:165859000-165881000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:165859200-165880400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:165859200-165881000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:165859400-165880200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:165859400-165880400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr1:165859400-165880600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:165859400-165880600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:165859600-165880600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:165860000-165880200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr1:165868400-165880200	Strong transcription	A549	lung
15	chr1:165870200-165882800	Weak transcription	Fetal Brain Male	brain
16	chr1:165870800-165880800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:165871000-165883200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:165871800-165880000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:165871800-165880800	Strong transcription	Fetal Stomach	stomach
20	chr1:165871800-165882200	Strong transcription	Fetal Brain Female	brain
21	chr1:165872400-165883200	Weak transcription	Brain Anterior Caudate	brain
22	chr1:165872400-165883200	Weak transcription	Brain Substantia Nigra	brain
23	chr1:165872800-165883400	Weak transcription	Fetal Kidney	kidney
24	chr1:165873000-165880000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:165873200-165881000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:165873600-165880400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:165873600-165881000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:165874000-165881200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:165874000-165881800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:165874200-165880200	Strong transcription	HMEC	breast
31	chr1:165874200-165880600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr1:165874800-165880600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:165874800-165881200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:165875000-165880200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:165875000-165880800	Strong transcription	Osteobl	bone
36	chr1:165875000-165881000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:165875000-165881000	Strong transcription	GM12878-XiMat	blood
38	chr1:165875000-165881400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:165875200-165880000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
40	chr1:165875200-165880000	Strong transcription	Brain Cingulate Gyrus	brain
41	chr1:165875200-165880800	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr1:165875200-165880800	Strong transcription	Fetal Muscle Leg	muscle
43	chr1:165875400-165881400	Strong transcription	Brain Germinal Matrix	brain
44	chr1:165875800-165883400	Weak transcription	Fetal Lung	lung
45	chr1:165876000-165883400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr1:165876200-165880200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:165876400-165880600	Strong transcription	NHEK	skin
48	chr1:165876400-165884200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr1:165876600-165880200	Strong transcription	Brain Hippocampus Middle	brain
50	chr1:165877000-165881600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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