Variant report

Variant	rs2153262
Chromosome Location	chr1:165894278-165894279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165686828..165687747-chr1:165893999..165894616,2	MCF-7	breast:
2	chr1:165893674..165894516-chr1:166402664..166403578,3	MCF-7	breast:
3	chr1:165686936..165687730-chr1:165893570..165894520,2	MCF-7	breast:
4	chr1:165893988..165894572-chr1:166402630..166403520,3	MCF-7	breast:
5	chr1:165894024..165894565-chr1:166134263..166134794,2	K562	blood:
6	chr1:165894034..165894595-chr1:166448047..166448891,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230898	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1061771	1.00[EUR][1000 genomes]
rs10918307	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12090859	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1663838	0.84[ASN][1000 genomes]
rs1663839	0.84[ASN][1000 genomes]
rs1663840	1.00[EUR][1000 genomes]
rs1768902	0.89[ASN][1000 genomes]
rs2153261	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2349108	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2349109	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3748701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790658	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790660	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790661	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790662	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790663	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790666	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3790667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3790673	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3806331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3806332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs522854	0.89[ASN][1000 genomes]
rs577133	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666697	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs6681761	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6693108	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs73031470	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
3	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:165883600-165896400	Weak transcription	Dnd41	blood
5	chr1:165893400-165895400	Enhancers	K562	blood
6	chr1:165894200-165894400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:165894200-165894400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr1:165894200-165894400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:165894200-165894400	Enhancers	Fetal Muscle Leg	muscle
10	chr1:165894200-165894400	Enhancers	Right Atrium	heart
11	chr1:165894200-165894600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:165894200-165894600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:165894200-165895400	Enhancers	Fetal Thymus	thymus
14	chr1:165894200-165895800	Enhancers	Thymus	Thymus

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