Variant report

Variant	rs10922811
Chromosome Location	chr1:90686201-90686202
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11487633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12058169	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12062997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12066835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074198	1.00[EUR][1000 genomes]
rs12074419	0.92[EUR][1000 genomes]
rs12076670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080222	1.00[EUR][1000 genomes]
rs12085161	1.00[EUR][1000 genomes]
rs12086859	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4514225	1.00[EUR][1000 genomes]
rs4514226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60343921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665059	1.00[EUR][1000 genomes]
rs6665162	1.00[EUR][1000 genomes]
rs74099405	1.00[EUR][1000 genomes]
rs74100374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90685000-90686400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:90685400-90686600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:90685400-90690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:90685400-90691000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:90685400-90691000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:90685600-90686400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:90685600-90688000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:90685600-90688200	Enhancers	Fetal Intestine Large	intestine
9	chr1:90685800-90687000	Enhancers	Dnd41	blood
10	chr1:90686000-90686400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:90686000-90686400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:90686000-90686400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:90686000-90686400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:90686000-90686400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr1:90686000-90686600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:90686000-90687200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:90686000-90687600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:90686000-90687800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:90686200-90686400	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr1:90686200-90686400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:90686200-90688000	Enhancers	Fetal Intestine Small	intestine

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