Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10922811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11487633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12058169	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12062997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12065814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12066835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074198	1.00[EUR][1000 genomes]
rs12074419	0.92[EUR][1000 genomes]
rs12076670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080222	1.00[EUR][1000 genomes]
rs12085161	1.00[EUR][1000 genomes]
rs12086859	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4514225	1.00[EUR][1000 genomes]
rs4514226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60343921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665059	1.00[EUR][1000 genomes]
rs6665162	1.00[EUR][1000 genomes]
rs74099405	1.00[EUR][1000 genomes]
rs74100375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74100382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90685400-90690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:90685400-90691000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:90685400-90691000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:90685600-90688000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:90685600-90688200	Enhancers	Fetal Intestine Large	intestine
6	chr1:90686000-90687600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:90686000-90687800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:90686200-90688000	Enhancers	Fetal Intestine Small	intestine
9	chr1:90686600-90687800	Enhancers	Liver	Liver
10	chr1:90686800-90690400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:90687200-90687600	Enhancers	Duodenum Mucosa	Duodenum

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