Variant report

Variant	rs12074198
Chromosome Location	chr1:90709162-90709163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10922811	1.00[EUR][1000 genomes]
rs11487633	1.00[EUR][1000 genomes]
rs12057810	1.00[EUR][1000 genomes]
rs12058169	1.00[EUR][1000 genomes]
rs12062997	1.00[EUR][1000 genomes]
rs12063919	1.00[EUR][1000 genomes]
rs12065814	0.92[EUR][1000 genomes]
rs12066835	1.00[EUR][1000 genomes]
rs12074419	0.92[EUR][1000 genomes]
rs12076670	1.00[EUR][1000 genomes]
rs12076765	1.00[EUR][1000 genomes]
rs12080222	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12085161	1.00[EUR][1000 genomes]
rs12086859	0.92[EUR][1000 genomes]
rs4514225	1.00[EUR][1000 genomes]
rs4514226	1.00[EUR][1000 genomes]
rs60343921	1.00[EUR][1000 genomes]
rs6665059	1.00[EUR][1000 genomes]
rs6665162	1.00[EUR][1000 genomes]
rs74099405	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74100374	1.00[EUR][1000 genomes]
rs74100375	1.00[EUR][1000 genomes]
rs74100377	1.00[EUR][1000 genomes]
rs74100378	1.00[EUR][1000 genomes]
rs74100382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90707400-90710400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:90708000-90710000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:90708800-90710800	Enhancers	HepG2	liver
4	chr1:90709000-90709400	Active TSS	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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