Variant report

Variant	rs10934039
Chromosome Location	chr3:110148974-110148975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110148648..110150242-chr3:110157242..110158931,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1040004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12330541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398343	1.00[EUR][1000 genomes]
rs1398350	1.00[EUR][1000 genomes]
rs1398351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398416	1.00[EUR][1000 genomes]
rs1512513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512518	1.00[EUR][1000 genomes]
rs1512664	1.00[EUR][1000 genomes]
rs1512668	1.00[EUR][1000 genomes]
rs1512670	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1512671	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1512673	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1512674	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1512683	1.00[EUR][1000 genomes]
rs1512685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533207	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533210	1.00[EUR][1000 genomes]
rs1606372	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1849369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1858444	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1913098	1.00[EUR][1000 genomes]
rs1949180	1.00[EUR][1000 genomes]
rs1949181	1.00[EUR][1000 genomes]
rs2036968	1.00[EUR][1000 genomes]
rs2137381	1.00[EUR][1000 genomes]
rs2137383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2137417	1.00[EUR][1000 genomes]
rs2249840	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669092	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669093	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669095	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669096	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669097	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669098	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712972	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712973	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712974	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712975	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712976	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712979	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2712981	1.00[EUR][1000 genomes]
rs3957568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682593	1.00[EUR][1000 genomes]
rs6437919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437921	1.00[EUR][1000 genomes]
rs6780526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6783722	1.00[EUR][1000 genomes]
rs6784660	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7615412	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963345	1.00[EUR][1000 genomes]
rs970165	1.00[EUR][1000 genomes]
rs9809749	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9819275	1.00[EUR][1000 genomes]
rs9839505	1.00[EUR][1000 genomes]
rs9857432	1.00[EUR][1000 genomes]
rs9868966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880902	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1838188	chr3:110134108-110173739	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110148600-110149000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:110148600-110149200	Enhancers	NHDF-Ad	bronchial
3	chr3:110148600-110149400	Enhancers	HSMM	muscle
4	chr3:110148600-110149600	Enhancers	HSMMtube	muscle
5	chr3:110148800-110149200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:110148800-110149400	Enhancers	Osteobl	bone

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