Variant report

Variant	rs1398350
Chromosome Location	chr3:110261864-110261865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1020891	1.00[EUR][1000 genomes]
rs1040004	1.00[EUR][1000 genomes]
rs10934039	1.00[EUR][1000 genomes]
rs12330541	1.00[EUR][1000 genomes]
rs1398343	1.00[EUR][1000 genomes]
rs1398351	1.00[EUR][1000 genomes]
rs1398416	1.00[EUR][1000 genomes]
rs1462297	1.00[EUR][1000 genomes]
rs1462312	1.00[EUR][1000 genomes]
rs1512513	1.00[EUR][1000 genomes]
rs1512517	1.00[EUR][1000 genomes]
rs1512518	1.00[EUR][1000 genomes]
rs1512664	1.00[EUR][1000 genomes]
rs1512668	1.00[EUR][1000 genomes]
rs1512670	1.00[EUR][1000 genomes]
rs1512671	1.00[EUR][1000 genomes]
rs1512673	1.00[EUR][1000 genomes]
rs1512674	1.00[EUR][1000 genomes]
rs1512683	1.00[EUR][1000 genomes]
rs1512685	1.00[EUR][1000 genomes]
rs1533193	1.00[EUR][1000 genomes]
rs1533207	1.00[EUR][1000 genomes]
rs1533209	1.00[EUR][1000 genomes]
rs1533210	1.00[EUR][1000 genomes]
rs1546533	1.00[EUR][1000 genomes]
rs1606372	1.00[EUR][1000 genomes]
rs1849369	1.00[EUR][1000 genomes]
rs1858444	1.00[EUR][1000 genomes]
rs1913098	1.00[EUR][1000 genomes]
rs1949180	1.00[EUR][1000 genomes]
rs1949181	1.00[EUR][1000 genomes]
rs1993781	1.00[EUR][1000 genomes]
rs2036968	1.00[EUR][1000 genomes]
rs2137381	1.00[EUR][1000 genomes]
rs2137383	1.00[EUR][1000 genomes]
rs2137417	1.00[EUR][1000 genomes]
rs2249840	1.00[EUR][1000 genomes]
rs2669092	1.00[EUR][1000 genomes]
rs2669093	1.00[EUR][1000 genomes]
rs2669095	1.00[EUR][1000 genomes]
rs2669096	1.00[EUR][1000 genomes]
rs2669097	1.00[EUR][1000 genomes]
rs2669098	1.00[EUR][1000 genomes]
rs2712972	1.00[EUR][1000 genomes]
rs2712973	1.00[EUR][1000 genomes]
rs2712974	1.00[EUR][1000 genomes]
rs2712975	1.00[EUR][1000 genomes]
rs2712976	1.00[EUR][1000 genomes]
rs2712979	1.00[EUR][1000 genomes]
rs2712981	1.00[EUR][1000 genomes]
rs3957568	1.00[EUR][1000 genomes]
rs4333116	1.00[EUR][1000 genomes]
rs4682012	1.00[EUR][1000 genomes]
rs4682177	1.00[EUR][1000 genomes]
rs4682593	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58412853	1.00[EUR][1000 genomes]
rs6437919	1.00[EUR][1000 genomes]
rs6437921	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6766908	1.00[EUR][1000 genomes]
rs6780526	1.00[EUR][1000 genomes]
rs6781418	1.00[EUR][1000 genomes]
rs6781884	1.00[EUR][1000 genomes]
rs6783722	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6784660	1.00[EUR][1000 genomes]
rs6798353	1.00[EUR][1000 genomes]
rs72941202	1.00[EUR][1000 genomes]
rs72943104	1.00[EUR][1000 genomes]
rs72943107	1.00[EUR][1000 genomes]
rs72943108	1.00[EUR][1000 genomes]
rs72943110	1.00[EUR][1000 genomes]
rs72943111	1.00[EUR][1000 genomes]
rs72943114	1.00[EUR][1000 genomes]
rs72943119	1.00[EUR][1000 genomes]
rs72944942	1.00[EUR][1000 genomes]
rs72944943	1.00[EUR][1000 genomes]
rs72944949	1.00[EUR][1000 genomes]
rs72944956	1.00[EUR][1000 genomes]
rs72944965	1.00[EUR][1000 genomes]
rs7612471	1.00[EUR][1000 genomes]
rs7615275	1.00[EUR][1000 genomes]
rs7615412	1.00[EUR][1000 genomes]
rs7639735	1.00[EUR][1000 genomes]
rs7641366	1.00[EUR][1000 genomes]
rs7644614	1.00[EUR][1000 genomes]
rs7652698	1.00[EUR][1000 genomes]
rs963345	1.00[EUR][1000 genomes]
rs970165	1.00[EUR][1000 genomes]
rs9809749	1.00[EUR][1000 genomes]
rs9818867	1.00[EUR][1000 genomes]
rs9819275	1.00[EUR][1000 genomes]
rs9824638	1.00[EUR][1000 genomes]
rs9829084	1.00[EUR][1000 genomes]
rs9839505	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9857432	0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9868966	1.00[EUR][1000 genomes]
rs9874159	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110260600-110262000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:110261000-110262000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:110261200-110262000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:110261200-110262000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:110261400-110262000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:110261400-110262000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:110261400-110262400	Enhancers	Fetal Intestine Large	intestine
8	chr3:110261600-110262000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:110261600-110262000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:110261600-110262000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:110261600-110262200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:110261600-110262200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:110261600-110269600	Weak transcription	K562	blood

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