Variant report

Variant	rs970165
Chromosome Location	chr3:110191924-110191925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1040004	1.00[EUR][1000 genomes]
rs10934039	1.00[EUR][1000 genomes]
rs12330541	1.00[EUR][1000 genomes]
rs1398343	1.00[EUR][1000 genomes]
rs1398350	1.00[EUR][1000 genomes]
rs1398351	1.00[EUR][1000 genomes]
rs1398416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512513	1.00[EUR][1000 genomes]
rs1512517	1.00[EUR][1000 genomes]
rs1512518	1.00[EUR][1000 genomes]
rs1512664	1.00[EUR][1000 genomes]
rs1512668	1.00[EUR][1000 genomes]
rs1512670	1.00[EUR][1000 genomes]
rs1512671	1.00[EUR][1000 genomes]
rs1512673	1.00[EUR][1000 genomes]
rs1512674	1.00[EUR][1000 genomes]
rs1512683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512685	1.00[EUR][1000 genomes]
rs1533193	1.00[EUR][1000 genomes]
rs1533207	1.00[EUR][1000 genomes]
rs1533209	1.00[EUR][1000 genomes]
rs1533210	1.00[EUR][1000 genomes]
rs1546533	1.00[EUR][1000 genomes]
rs1606372	1.00[EUR][1000 genomes]
rs1849369	1.00[EUR][1000 genomes]
rs1858444	1.00[EUR][1000 genomes]
rs1913098	1.00[EUR][1000 genomes]
rs1949180	1.00[EUR][1000 genomes]
rs1949181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036968	1.00[EUR][1000 genomes]
rs2137381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2137383	1.00[EUR][1000 genomes]
rs2137417	1.00[EUR][1000 genomes]
rs2249840	1.00[EUR][1000 genomes]
rs2669092	1.00[EUR][1000 genomes]
rs2669093	1.00[EUR][1000 genomes]
rs2669095	1.00[EUR][1000 genomes]
rs2669096	1.00[EUR][1000 genomes]
rs2669097	1.00[EUR][1000 genomes]
rs2669098	1.00[EUR][1000 genomes]
rs2712972	1.00[EUR][1000 genomes]
rs2712973	1.00[EUR][1000 genomes]
rs2712974	1.00[EUR][1000 genomes]
rs2712975	1.00[EUR][1000 genomes]
rs2712976	1.00[EUR][1000 genomes]
rs2712979	1.00[EUR][1000 genomes]
rs2712981	1.00[EUR][1000 genomes]
rs3957568	1.00[EUR][1000 genomes]
rs4682012	1.00[EUR][1000 genomes]
rs4682177	1.00[EUR][1000 genomes]
rs4682593	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6437919	1.00[EUR][1000 genomes]
rs6437921	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6766908	1.00[EUR][1000 genomes]
rs6780526	1.00[EUR][1000 genomes]
rs6781884	1.00[EUR][1000 genomes]
rs6783722	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6784660	1.00[EUR][1000 genomes]
rs72941202	1.00[EUR][1000 genomes]
rs72943104	1.00[EUR][1000 genomes]
rs72943107	1.00[EUR][1000 genomes]
rs72943108	1.00[EUR][1000 genomes]
rs72943110	1.00[EUR][1000 genomes]
rs72943111	1.00[EUR][1000 genomes]
rs72943114	1.00[EUR][1000 genomes]
rs72943119	1.00[EUR][1000 genomes]
rs72944942	1.00[EUR][1000 genomes]
rs72944943	1.00[EUR][1000 genomes]
rs72944949	1.00[EUR][1000 genomes]
rs7615412	1.00[EUR][1000 genomes]
rs7641366	1.00[EUR][1000 genomes]
rs7652698	1.00[EUR][1000 genomes]
rs963345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9809749	1.00[EUR][1000 genomes]
rs9819275	1.00[EUR][1000 genomes]
rs9824638	1.00[EUR][1000 genomes]
rs9839505	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9857432	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9868966	1.00[EUR][1000 genomes]
rs9874159	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110191800-110192200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
2	chr3:110191800-110192600	Enhancers	Fetal Intestine Small	intestine

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