Variant report

Variant	rs1533207
Chromosome Location	chr3:110154498-110154499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1040004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10934039	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12330541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398343	1.00[EUR][1000 genomes]
rs1398350	1.00[EUR][1000 genomes]
rs1398351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398416	1.00[EUR][1000 genomes]
rs1512513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512518	1.00[EUR][1000 genomes]
rs1512664	1.00[EUR][1000 genomes]
rs1512668	1.00[EUR][1000 genomes]
rs1512670	1.00[EUR][1000 genomes]
rs1512671	1.00[EUR][1000 genomes]
rs1512673	1.00[EUR][1000 genomes]
rs1512674	1.00[EUR][1000 genomes]
rs1512683	1.00[EUR][1000 genomes]
rs1512685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533210	1.00[EUR][1000 genomes]
rs1606372	1.00[EUR][1000 genomes]
rs1849369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1858444	1.00[EUR][1000 genomes]
rs1913098	1.00[EUR][1000 genomes]
rs1949180	1.00[EUR][1000 genomes]
rs1949181	1.00[EUR][1000 genomes]
rs2036968	1.00[EUR][1000 genomes]
rs2137381	1.00[EUR][1000 genomes]
rs2137383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2137417	1.00[EUR][1000 genomes]
rs2249840	1.00[EUR][1000 genomes]
rs2669092	1.00[EUR][1000 genomes]
rs2669093	1.00[EUR][1000 genomes]
rs2669095	1.00[EUR][1000 genomes]
rs2669096	1.00[EUR][1000 genomes]
rs2669097	1.00[EUR][1000 genomes]
rs2669098	1.00[EUR][1000 genomes]
rs2712972	1.00[EUR][1000 genomes]
rs2712973	1.00[EUR][1000 genomes]
rs2712974	1.00[EUR][1000 genomes]
rs2712975	1.00[EUR][1000 genomes]
rs2712976	1.00[EUR][1000 genomes]
rs2712979	1.00[EUR][1000 genomes]
rs2712981	1.00[EUR][1000 genomes]
rs3957568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682593	1.00[EUR][1000 genomes]
rs6437919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437921	1.00[EUR][1000 genomes]
rs6780526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6783722	1.00[EUR][1000 genomes]
rs6784660	1.00[EUR][1000 genomes]
rs7615412	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7652698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963345	1.00[EUR][1000 genomes]
rs970165	1.00[EUR][1000 genomes]
rs9809749	1.00[EUR][1000 genomes]
rs9819275	1.00[EUR][1000 genomes]
rs9824638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839505	1.00[EUR][1000 genomes]
rs9857432	1.00[EUR][1000 genomes]
rs9868966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880902	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1838188	chr3:110134108-110173739	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110152800-110154600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:110153800-110157200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links