Variant report

Variant	rs10935892
Chromosome Location	chr3:99371708-99371709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12493417	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12639371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841579	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1708169	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1913235	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2139932	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2280504	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280505	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs496664	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56366097	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281825	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281826	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792355	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7613565	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9758302	0.80[ASN][1000 genomes]
rs9810097	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815950	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9821695	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824449	0.82[AMR][1000 genomes]
rs9824784	0.82[AMR][1000 genomes]
rs9837297	0.82[AMR][1000 genomes]
rs9872048	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
2	chr3:99367200-99372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:99367200-99372000	Weak transcription	Aorta	Aorta
4	chr3:99367200-99372800	Weak transcription	Stomach Mucosa	stomach
5	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
6	chr3:99367800-99371800	Weak transcription	NHEK	skin
7	chr3:99367800-99372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:99368000-99372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:99369000-99373000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:99369600-99372600	Enhancers	NHDF-Ad	bronchial
11	chr3:99370000-99372600	Enhancers	Colon Smooth Muscle	Colon
12	chr3:99370000-99372600	Genic enhancers	HSMM	muscle
13	chr3:99370200-99372200	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:99370600-99372000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:99370600-99372600	Weak transcription	Adipose Nuclei	Adipose
16	chr3:99370600-99372600	Genic enhancers	HUVEC	blood vessel
17	chr3:99370600-99373200	Genic enhancers	Muscle Satellite Cultured Cells	--
18	chr3:99370600-99375400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:99370600-99378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:99370800-99372000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:99370800-99374400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:99370800-99377200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:99370800-99377600	Weak transcription	HMEC	breast
24	chr3:99371000-99374000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:99371000-99375200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:99371200-99372600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:99371200-99374200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:99371400-99374000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:99371400-99377000	Weak transcription	NHLF	lung
30	chr3:99371600-99372200	Strong transcription	NH-A	brain
31	chr3:99371600-99372400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:99371600-99372800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:99371600-99377400	Weak transcription	HSMMtube	muscle

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