Variant report

Variant	rs1913235
Chromosome Location	chr3:99366831-99366832
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10935892	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12639371	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1355765	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1513300	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs16841579	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1708169	0.86[ASN][1000 genomes]
rs2139932	0.87[ASN][1000 genomes]
rs2280504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs496664	0.87[ASN][1000 genomes]
rs56366097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281825	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6792355	0.88[ASN][1000 genomes]
rs7613565	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9758302	0.83[ASN][1000 genomes]
rs9810097	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9815950	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9821695	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9824449	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9824784	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9837297	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9872048	0.88[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
3	chr3:99362600-99367600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:99362600-99368800	Enhancers	Colon Smooth Muscle	Colon
5	chr3:99362800-99369200	Enhancers	NHLF	lung
6	chr3:99363200-99367400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:99363800-99367800	Enhancers	HMEC	breast
8	chr3:99363800-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:99364000-99367000	Enhancers	NHDF-Ad	bronchial
10	chr3:99364000-99370200	Weak transcription	Ovary	ovary
11	chr3:99364400-99367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:99364400-99367400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99364400-99370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:99364800-99367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:99364800-99368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:99365000-99367000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:99365000-99367000	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:99365200-99367000	Weak transcription	Aorta	Aorta
23	chr3:99365200-99368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:99365200-99370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:99365400-99367000	Weak transcription	Stomach Mucosa	stomach
26	chr3:99365400-99367400	Weak transcription	Fetal Stomach	stomach
27	chr3:99365400-99369800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:99365600-99369600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:99365600-99369800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:99366000-99368200	Enhancers	Rectal Smooth Muscle	rectum
31	chr3:99366200-99368200	Enhancers	Adipose Nuclei	Adipose
32	chr3:99366400-99367800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
33	chr3:99366400-99367800	Genic enhancers	HSMM	muscle
34	chr3:99366600-99367000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:99366600-99367000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:99366600-99367000	Enhancers	Brain Germinal Matrix	brain
37	chr3:99366600-99367200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr3:99366600-99367200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:99366600-99367200	Transcr. at gene 5' and 3'	HUVEC	blood vessel
40	chr3:99366600-99367200	Flanking Active TSS	NHEK	skin
41	chr3:99366600-99367400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr3:99366800-99367000	Enhancers	NH-A	brain
43	chr3:99366800-99367200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:99366800-99367200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:99366800-99367200	Enhancers	Fetal Lung	lung
46	chr3:99366800-99368200	Enhancers	HSMMtube	muscle
47	chr3:99366800-99372600	Genic enhancers	Osteobl	bone

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