Variant report

Variant	rs12493417
Chromosome Location	chr3:99360957-99360958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10935892	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12639371	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1355765	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1513300	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs16841579	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1708169	0.83[ASN][1000 genomes]
rs1913235	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2139932	0.84[ASN][1000 genomes]
rs2280504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs496664	0.84[ASN][1000 genomes]
rs56366097	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281825	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281826	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6792355	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7613565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9810097	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9815950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9821695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9824449	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs9824784	0.82[AMR][1000 genomes]
rs9837297	0.82[AMR][1000 genomes]
rs9872048	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99354400-99362000	Active TSS	Aorta	Aorta
2	chr3:99357400-99361600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:99357600-99363800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:99357800-99363400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:99358000-99363200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:99358000-99363600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:99358000-99363800	Weak transcription	Ovary	ovary
8	chr3:99358000-99364000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:99358200-99362600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:99358200-99363600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:99358800-99364200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:99359000-99361400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:99359200-99362800	Weak transcription	HSMMtube	muscle
15	chr3:99359200-99363000	Transcr. at gene 5' and 3'	HUVEC	blood vessel
16	chr3:99359400-99361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:99359600-99361400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:99359600-99362600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:99359800-99361600	Transcr. at gene 5' and 3'	Osteobl	bone
20	chr3:99359800-99363000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:99359800-99364800	Genic enhancers	HSMM	muscle
22	chr3:99360000-99361200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:99360000-99363800	Weak transcription	Adipose Nuclei	Adipose
24	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
25	chr3:99360200-99361400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
26	chr3:99360200-99362000	Weak transcription	NHEK	skin
27	chr3:99360200-99363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:99360200-99363800	Weak transcription	HMEC	breast
29	chr3:99360400-99361200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:99360400-99361200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:99360400-99361200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr3:99360400-99361200	Flanking Active TSS	NHDF-Ad	bronchial
33	chr3:99360600-99361200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr3:99360600-99361400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:99360600-99361400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
36	chr3:99360600-99362000	Enhancers	NH-A	brain
37	chr3:99360600-99362600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:99360600-99363800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:99360600-99364400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:99360800-99361000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr3:99360800-99361200	Enhancers	NHLF	lung
42	chr3:99360800-99361600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:99360800-99363000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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