Variant report

Variant	rs9821695
Chromosome Location	chr3:99367163-99367164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10935892	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12639371	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1355765	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs1513300	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap]
rs16841579	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1708169	0.84[ASN][1000 genomes]
rs1913235	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2139932	0.86[ASN][1000 genomes]
rs2280504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280505	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs496664	0.86[ASN][1000 genomes]
rs56366097	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281825	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792355	0.87[ASN][1000 genomes]
rs7613565	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9758302	0.81[ASN][1000 genomes]
rs9810097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824449	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs9824784	0.81[AMR][1000 genomes]
rs9837297	0.81[AMR][1000 genomes]
rs9872048	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9821695	DNAJC5B	trans	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
3	chr3:99362600-99367600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:99362600-99368800	Enhancers	Colon Smooth Muscle	Colon
5	chr3:99362800-99369200	Enhancers	NHLF	lung
6	chr3:99363200-99367400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:99363800-99367800	Enhancers	HMEC	breast
8	chr3:99363800-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:99364000-99370200	Weak transcription	Ovary	ovary
10	chr3:99364400-99367400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:99364400-99370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:99364800-99368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:99365200-99368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:99365200-99370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:99365400-99367400	Weak transcription	Fetal Stomach	stomach
20	chr3:99365400-99369800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:99365600-99369600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:99365600-99369800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:99366000-99368200	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:99366200-99368200	Enhancers	Adipose Nuclei	Adipose
25	chr3:99366400-99367800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
26	chr3:99366400-99367800	Genic enhancers	HSMM	muscle
27	chr3:99366600-99367200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:99366600-99367200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr3:99366600-99367200	Transcr. at gene 5' and 3'	HUVEC	blood vessel
30	chr3:99366600-99367200	Flanking Active TSS	NHEK	skin
31	chr3:99366600-99367400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr3:99366800-99367200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:99366800-99367200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:99366800-99367200	Enhancers	Fetal Lung	lung
35	chr3:99366800-99368200	Enhancers	HSMMtube	muscle
36	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
37	chr3:99367000-99367200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:99367000-99367200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:99367000-99367200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:99367000-99367200	Genic enhancers	Aorta	Aorta
41	chr3:99367000-99367200	Enhancers	Esophagus	oesophagus
42	chr3:99367000-99367200	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr3:99367000-99367200	Enhancers	Stomach Mucosa	stomach
44	chr3:99367000-99367200	Flanking Active TSS	NHDF-Ad	bronchial
45	chr3:99367000-99367400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:99367000-99367400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:99367000-99367800	Genic enhancers	NH-A	brain

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