Variant report

Variant	rs10936099
Chromosome Location	chr3:157442585-157442586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11717040	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1499783	0.83[EUR][1000 genomes]
rs1499784	0.83[EUR][1000 genomes]
rs1499785	0.83[EUR][1000 genomes]
rs1499786	0.83[EUR][1000 genomes]
rs1995232	0.81[EUR][1000 genomes]
rs1995235	0.83[EUR][1000 genomes]
rs2315860	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28887897	0.80[ASN][1000 genomes]
rs4680393	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6782050	0.83[EUR][1000 genomes]
rs6786360	0.83[EUR][1000 genomes]
rs6790949	0.83[EUR][1000 genomes]
rs923345	0.83[EUR][1000 genomes]
rs9289990	0.83[EUR][1000 genomes]
rs9818584	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9837835	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv592121	chr3:157437068-157593470	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv997770	chr3:157441619-157595315	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157442200-157443000	Active TSS	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links