Variant report
| Variant | rs11717040 |
|---|---|
| Chromosome Location | chr3:157442839-157442840 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10936099 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1499783 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1499784 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1499785 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1499786 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1685680 | 0.80[ASN][1000 genomes] |
| rs1995232 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1995235 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2315860 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28887897 | 0.82[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4680393 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6782050 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6786360 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6790949 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7630713 | 0.80[ASN][1000 genomes] |
| rs792738 | 0.80[ASN][1000 genomes] |
| rs792739 | 0.80[ASN][1000 genomes] |
| rs792740 | 0.80[ASN][1000 genomes] |
| rs807201 | 0.80[ASN][1000 genomes] |
| rs923345 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9289990 | 0.86[EUR][1000 genomes] |
| rs9818584 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9836369 | 0.80[ASN][1000 genomes] |
| rs9837835 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9882048 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829767 | chr3:157306411-157490444 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv592121 | chr3:157437068-157593470 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv997770 | chr3:157441619-157595315 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:157442200-157443000 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
