Variant report

Variant	rs6786360
Chromosome Location	chr3:157472541-157472542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157471365..157474045-chr3:157474251..157477153,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10936099	0.83[EUR][1000 genomes]
rs11717040	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1499783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1499784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1499785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1499786	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1995232	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1995235	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2315860	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28887897	0.82[ASN][1000 genomes]
rs4680393	0.87[EUR][1000 genomes]
rs6782050	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6790949	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs923345	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289990	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9818584	0.87[EUR][1000 genomes]
rs9837835	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv592121	chr3:157437068-157593470	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv997770	chr3:157441619-157595315	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157469000-157472800	Enhancers	Fetal Intestine Large	intestine
2	chr3:157469000-157472800	Enhancers	Fetal Intestine Small	intestine
3	chr3:157470600-157473000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:157470800-157473200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:157471200-157473600	Enhancers	Brain Germinal Matrix	brain
6	chr3:157471200-157474000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:157471600-157472800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:157471600-157473000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:157471600-157473600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:157471800-157473000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:157471800-157473000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:157471800-157473400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:157472000-157472600	Active TSS	Brain Anterior Caudate	brain
14	chr3:157472000-157472800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:157472000-157473000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:157472000-157473200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:157472200-157472600	Weak transcription	Fetal Brain Male	brain
18	chr3:157472200-157473400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:157472400-157472600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:157472400-157472800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:157472400-157473200	Enhancers	HUES6 Cell Line	embryonic stem cell

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