Variant report

Variant	rs28887897
Chromosome Location	chr3:157464766-157464767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936099	0.80[ASN][1000 genomes]
rs11717040	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1499783	0.85[ASN][1000 genomes]
rs1499784	0.85[ASN][1000 genomes]
rs1499785	0.85[ASN][1000 genomes]
rs1499786	0.85[ASN][1000 genomes]
rs1995232	0.84[ASN][1000 genomes]
rs1995235	0.84[ASN][1000 genomes]
rs2315860	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6782050	0.83[ASN][1000 genomes]
rs6786360	0.82[ASN][1000 genomes]
rs6790949	0.85[ASN][1000 genomes]
rs923345	0.85[ASN][1000 genomes]
rs9818584	0.81[AFR][1000 genomes]
rs9837835	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv592121	chr3:157437068-157593470	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv997770	chr3:157441619-157595315	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157464000-157464800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:157464200-157464800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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