Variant report

Variant	rs10936184
Chromosome Location	chr3:159760807-159760808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10936189	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936194	0.85[EUR][1000 genomes]
rs11917447	0.85[EUR][1000 genomes]
rs11920313	0.85[EUR][1000 genomes]
rs11920336	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922319	0.85[EUR][1000 genomes]
rs11927825	0.85[EUR][1000 genomes]
rs11928186	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632268	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633525	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634610	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636696	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638214	0.95[EUR][1000 genomes]
rs28498615	0.95[EUR][1000 genomes]
rs35782040	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56691220	0.95[EUR][1000 genomes]
rs59977827	0.95[EUR][1000 genomes]
rs6767139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159757200-159766600	Weak transcription	Pancreas	Pancrea
2	chr3:159758400-159762400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links