Variant report

Variant	rs11922319
Chromosome Location	chr3:159804353-159804354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10936184	0.85[EUR][1000 genomes]
rs10936189	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10936194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11920313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11920336	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11927825	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11928186	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12632268	0.89[EUR][1000 genomes]
rs12633525	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12634610	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12636696	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12638214	0.89[EUR][1000 genomes]
rs28498615	0.89[EUR][1000 genomes]
rs35782040	0.89[EUR][1000 genomes]
rs56691220	0.89[EUR][1000 genomes]
rs59977827	0.89[EUR][1000 genomes]
rs6767139	0.85[EUR][1000 genomes]
rs6778519	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
3	esv13734	chr3:159794041-159814966	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv819439	chr3:159800647-159815768	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3438561	chr3:159800887-159807595	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3345690	chr3:159802154-159808833	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3341529	chr3:159802235-159806612	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159801000-159814600	Weak transcription	Gastric	stomach
2	chr3:159802800-159808000	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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