Variant report

Variant	rs10936189
Chromosome Location	chr3:159770395-159770396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10936184	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936194	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11917447	0.85[EUR][1000 genomes]
rs11920313	0.85[EUR][1000 genomes]
rs11920336	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922319	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11927825	0.85[EUR][1000 genomes]
rs11928186	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632268	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634610	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12638214	0.95[EUR][1000 genomes]
rs28498615	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35782040	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56691220	0.95[EUR][1000 genomes]
rs59977827	0.95[EUR][1000 genomes]
rs6767139	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778519	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159766400-159772800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:159767600-159770600	Weak transcription	Aorta	Aorta
3	chr3:159768000-159771000	Weak transcription	Gastric	stomach
4	chr3:159768800-159770400	Enhancers	HepG2	liver
5	chr3:159769800-159771000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr3:159770000-159770400	Enhancers	Liver	Liver
7	chr3:159770000-159770400	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:159770000-159771000	Flanking Active TSS	HMEC	breast
9	chr3:159770000-159771400	Active TSS	Colon Smooth Muscle	Colon
10	chr3:159770200-159770400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr3:159770200-159770600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:159770200-159770600	Flanking Active TSS	Ovary	ovary
13	chr3:159770200-159770600	Enhancers	Pancreas	Pancrea
14	chr3:159770200-159770800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:159770200-159771000	Enhancers	Fetal Heart	heart
16	chr3:159770200-159771200	Active TSS	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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