Variant report

Variant	rs56691220
Chromosome Location	chr3:159756058-159756059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10936184	0.95[EUR][1000 genomes]
rs10936189	0.95[EUR][1000 genomes]
rs10936194	0.89[EUR][1000 genomes]
rs11917447	0.89[EUR][1000 genomes]
rs11920313	0.89[EUR][1000 genomes]
rs11920336	1.00[EUR][1000 genomes]
rs11922319	0.89[EUR][1000 genomes]
rs11927825	0.89[EUR][1000 genomes]
rs11928186	1.00[EUR][1000 genomes]
rs12632268	1.00[EUR][1000 genomes]
rs12633525	1.00[EUR][1000 genomes]
rs12634610	1.00[EUR][1000 genomes]
rs12636696	1.00[EUR][1000 genomes]
rs12638214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498615	1.00[EUR][1000 genomes]
rs35782040	1.00[EUR][1000 genomes]
rs59977827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767139	0.95[EUR][1000 genomes]
rs6778519	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:159747000-159756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:159755800-159757400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:159755800-159757600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:159756000-159756200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr3:159756000-159756200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
7	chr3:159756000-159756200	Enhancers	Fetal Brain Male	brain
8	chr3:159756000-159756400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr3:159756000-159756400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:159756000-159756600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:159756000-159756800	Active TSS	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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