Variant report

Variant	rs10939904
Chromosome Location	chr5:50571182-50571183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10080044	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12055073	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12187872	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16878699	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2062722	0.97[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2134251	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2202134	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34503818	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35603247	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6897940	0.93[ASN][1000 genomes]
rs7709442	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7712418	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs924626	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9291701	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9291725	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020970	chr5:50569183-50657424	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv968911	chr5:50570110-50572356	Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50567200-50574400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:50569200-50574200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:50569800-50574400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:50570000-50574200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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