Variant report

Variant	rs2134251
Chromosome Location	chr5:50510866-50510867
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10080044	0.96[ASN][1000 genomes]
rs10939904	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12055073	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12187872	0.93[ASN][1000 genomes]
rs16878699	0.86[ASN][1000 genomes]
rs2062722	0.87[ASN][1000 genomes]
rs2202134	0.98[ASN][1000 genomes]
rs34503818	0.93[ASN][1000 genomes]
rs35603247	0.93[ASN][1000 genomes]
rs6897940	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7709442	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7712418	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs924626	0.93[ASN][1000 genomes]
rs9291701	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291725	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2134251	ISL1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50510000-50511000	Weak transcription	Fetal Brain Female	brain
2	chr5:50510200-50511000	Enhancers	Fetal Brain Male	brain
3	chr5:50510400-50511600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr5:50510400-50511800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:50510400-50511800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:50510400-50511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:50510600-50511000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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