Variant report

Variant	rs1094197
Chromosome Location	chr8:89470498-89470499
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10093191	0.83[ASN][1000 genomes]
rs10095262	0.83[ASN][1000 genomes]
rs10095499	0.83[ASN][1000 genomes]
rs10096195	0.83[ASN][1000 genomes]
rs10098834	0.83[ASN][1000 genomes]
rs10099075	0.83[ASN][1000 genomes]
rs10099233	0.83[ASN][1000 genomes]
rs10099461	0.83[ASN][1000 genomes]
rs10103336	0.83[ASN][1000 genomes]
rs10103474	0.83[ASN][1000 genomes]
rs10110453	0.83[ASN][1000 genomes]
rs10112810	0.83[ASN][1000 genomes]
rs10113214	0.83[ASN][1000 genomes]
rs10504839	0.86[ASN][1000 genomes]
rs11995730	0.86[ASN][1000 genomes]
rs1586492	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1601816	0.86[ASN][1000 genomes]
rs16881745	0.83[ASN][1000 genomes]
rs16882035	0.83[ASN][1000 genomes]
rs16882334	0.83[ASN][1000 genomes]
rs16882368	0.83[ASN][1000 genomes]
rs16882408	0.83[ASN][1000 genomes]
rs16882464	0.86[ASN][1000 genomes]
rs16882621	0.86[ASN][1000 genomes]
rs16882622	0.86[ASN][1000 genomes]
rs16882960	0.86[ASN][1000 genomes]
rs16882980	0.86[ASN][1000 genomes]
rs28414285	0.83[ASN][1000 genomes]
rs28581869	0.83[ASN][1000 genomes]
rs28768402	0.83[ASN][1000 genomes]
rs55684806	0.83[ASN][1000 genomes]
rs55743536	0.86[ASN][1000 genomes]
rs55848977	0.86[ASN][1000 genomes]
rs56010350	0.83[ASN][1000 genomes]
rs56039725	0.80[ASN][1000 genomes]
rs56324438	0.86[ASN][1000 genomes]
rs56691611	0.86[ASN][1000 genomes]
rs56912549	0.83[ASN][1000 genomes]
rs57047577	0.86[ASN][1000 genomes]
rs57195479	0.80[ASN][1000 genomes]
rs57771217	0.83[ASN][1000 genomes]
rs58164144	0.86[ASN][1000 genomes]
rs58337229	0.83[ASN][1000 genomes]
rs58399951	0.86[ASN][1000 genomes]
rs58414801	0.86[ASN][1000 genomes]
rs58453379	0.86[ASN][1000 genomes]
rs58720276	0.86[ASN][1000 genomes]
rs58754325	0.86[ASN][1000 genomes]
rs58994609	0.86[ASN][1000 genomes]
rs59043278	0.86[ASN][1000 genomes]
rs59107062	0.83[ASN][1000 genomes]
rs59119264	0.86[ASN][1000 genomes]
rs59290812	0.86[ASN][1000 genomes]
rs59425875	0.83[ASN][1000 genomes]
rs59430846	0.83[ASN][1000 genomes]
rs59484067	0.83[ASN][1000 genomes]
rs59580800	0.86[ASN][1000 genomes]
rs59645827	0.86[ASN][1000 genomes]
rs59759655	0.80[ASN][1000 genomes]
rs59951423	0.83[ASN][1000 genomes]
rs60245117	0.86[ASN][1000 genomes]
rs60336907	0.86[ASN][1000 genomes]
rs60669462	0.86[ASN][1000 genomes]
rs60779425	0.86[ASN][1000 genomes]
rs60953371	0.86[ASN][1000 genomes]
rs61088422	0.83[ASN][1000 genomes]
rs61109805	0.86[ASN][1000 genomes]
rs61177731	0.86[ASN][1000 genomes]
rs61341431	0.86[ASN][1000 genomes]
rs6469419	0.86[ASN][1000 genomes]
rs6980734	0.86[ASN][1000 genomes]
rs6988021	0.86[ASN][1000 genomes]
rs7000891	0.86[ASN][1000 genomes]
rs7001241	0.86[ASN][1000 genomes]
rs7001875	0.86[ASN][1000 genomes]
rs7004757	0.86[ASN][1000 genomes]
rs7005386	0.83[ASN][1000 genomes]
rs7018226	0.86[ASN][1000 genomes]
rs73277124	0.83[ASN][1000 genomes]
rs73279213	0.83[ASN][1000 genomes]
rs73279219	0.83[ASN][1000 genomes]
rs73279224	0.83[ASN][1000 genomes]
rs73279231	0.83[ASN][1000 genomes]
rs73289232	0.83[ASN][1000 genomes]
rs73289254	0.86[ASN][1000 genomes]
rs73289257	0.86[ASN][1000 genomes]
rs73289264	0.86[ASN][1000 genomes]
rs73289267	0.86[ASN][1000 genomes]
rs73291151	0.86[ASN][1000 genomes]
rs73291153	0.86[ASN][1000 genomes]
rs73291154	0.86[ASN][1000 genomes]
rs73291157	0.86[ASN][1000 genomes]
rs73291159	0.86[ASN][1000 genomes]
rs73291160	0.86[ASN][1000 genomes]
rs73291164	0.86[ASN][1000 genomes]
rs73291166	0.86[ASN][1000 genomes]
rs73291175	0.86[ASN][1000 genomes]
rs73291177	0.86[ASN][1000 genomes]
rs73291179	0.86[ASN][1000 genomes]
rs73291181	0.86[ASN][1000 genomes]
rs73291190	0.86[ASN][1000 genomes]
rs73291191	0.86[ASN][1000 genomes]
rs73692571	0.86[ASN][1000 genomes]
rs73694046	0.86[ASN][1000 genomes]
rs73694050	0.86[ASN][1000 genomes]
rs73694056	0.86[ASN][1000 genomes]
rs73694057	0.86[ASN][1000 genomes]
rs7814792	0.86[ASN][1000 genomes]
rs7814799	0.86[ASN][1000 genomes]
rs7845586	0.86[ASN][1000 genomes]
rs9297468	0.83[ASN][1000 genomes]
rs9297469	0.83[ASN][1000 genomes]
rs9297470	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89468800-89471000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:89470000-89470800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr8:89470200-89470600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
4	chr8:89470200-89472000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr8:89470200-89472600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr8:89470400-89470600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr8:89470400-89470800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr8:89470400-89471600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links