Variant report

Variant	rs56912549
Chromosome Location	chr8:89365835-89365836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89364571..89367523-chr8:89369307..89370876,2	MCF-7	breast:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10093191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103178	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10103336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504839	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10504863	0.85[ASN][1000 genomes]
rs1094197	0.83[ASN][1000 genomes]
rs11995730	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1586492	0.97[ASN][1000 genomes]
rs1601816	0.97[ASN][1000 genomes]
rs16881745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882334	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882464	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16882621	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16882622	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16882960	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16882980	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16883962	0.85[ASN][1000 genomes]
rs28414285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28453085	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28581869	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758406	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28768402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36116061	0.94[ASN][1000 genomes]
rs55684806	1.00[ASN][1000 genomes]
rs55743536	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55848977	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56010350	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56039725	0.91[ASN][1000 genomes]
rs56324438	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56691611	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57047577	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57195479	0.90[ASN][1000 genomes]
rs57771217	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58164144	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58337229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58399951	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58414801	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58453379	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58720276	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58723841	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58754325	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58994609	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59043278	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59107062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59119264	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59290812	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59425875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59430846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59484067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59580800	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59645827	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59759655	0.90[ASN][1000 genomes]
rs59951423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60245117	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60336907	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60669462	0.97[ASN][1000 genomes]
rs60779425	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60953371	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61088422	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61109805	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61177731	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61341431	0.97[ASN][1000 genomes]
rs6469419	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980734	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988021	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000891	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001241	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001875	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7004757	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7005386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018226	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73277124	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73289232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73289254	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73289257	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73289264	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73289267	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291151	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291153	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291154	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291157	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291159	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291160	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291164	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291166	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291175	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291177	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291179	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291181	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291190	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73291191	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73692571	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73694046	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73694050	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73694056	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73694057	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814792	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814799	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7845586	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9297468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297469	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891171	chr8:89342944-89439469	Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3385384	chr8:89364086-89366384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89365400-89366000	Enhancers	Fetal Lung	lung

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