Variant report

Variant	rs16883962
Chromosome Location	chr8:89528148-89528149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10093191	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10095262	0.85[ASN][1000 genomes]
rs10095499	0.85[ASN][1000 genomes]
rs10096195	0.85[ASN][1000 genomes]
rs10098834	0.85[ASN][1000 genomes]
rs10099075	0.85[ASN][1000 genomes]
rs10099233	0.85[ASN][1000 genomes]
rs10099461	0.85[ASN][1000 genomes]
rs10103336	0.85[ASN][1000 genomes]
rs10103474	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10110453	0.85[ASN][1000 genomes]
rs10112810	0.85[ASN][1000 genomes]
rs10113214	0.85[ASN][1000 genomes]
rs10504839	0.88[ASN][1000 genomes]
rs10504863	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995730	0.88[ASN][1000 genomes]
rs1394515	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1586492	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1601816	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16881745	0.85[ASN][1000 genomes]
rs16882035	0.85[ASN][1000 genomes]
rs16882334	0.85[ASN][1000 genomes]
rs16882368	0.85[ASN][1000 genomes]
rs16882408	0.85[ASN][1000 genomes]
rs16882464	0.88[ASN][1000 genomes]
rs16882621	0.88[ASN][1000 genomes]
rs16882622	0.88[ASN][1000 genomes]
rs16882960	0.88[ASN][1000 genomes]
rs16882980	0.88[ASN][1000 genomes]
rs28414285	0.85[ASN][1000 genomes]
rs28561765	0.86[EUR][1000 genomes]
rs28581869	0.85[ASN][1000 genomes]
rs28768402	0.85[ASN][1000 genomes]
rs4559289	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs55684806	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55743536	0.88[ASN][1000 genomes]
rs55848977	0.88[ASN][1000 genomes]
rs56010350	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56039725	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56324438	0.88[ASN][1000 genomes]
rs56691611	0.88[ASN][1000 genomes]
rs56912549	0.85[ASN][1000 genomes]
rs57047577	0.88[ASN][1000 genomes]
rs57195479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57771217	0.85[ASN][1000 genomes]
rs58164144	0.88[ASN][1000 genomes]
rs58337229	0.85[ASN][1000 genomes]
rs58399951	0.88[ASN][1000 genomes]
rs58414801	0.88[ASN][1000 genomes]
rs58453379	0.88[ASN][1000 genomes]
rs58720276	0.88[ASN][1000 genomes]
rs58754325	0.88[ASN][1000 genomes]
rs58994609	0.88[ASN][1000 genomes]
rs59043278	0.88[ASN][1000 genomes]
rs59107062	0.85[ASN][1000 genomes]
rs59119264	0.88[ASN][1000 genomes]
rs59290812	0.88[ASN][1000 genomes]
rs59425875	0.85[ASN][1000 genomes]
rs59430846	0.85[ASN][1000 genomes]
rs59484067	0.85[ASN][1000 genomes]
rs59580800	0.88[ASN][1000 genomes]
rs59645827	0.88[ASN][1000 genomes]
rs59759655	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59951423	0.85[ASN][1000 genomes]
rs60245117	0.88[ASN][1000 genomes]
rs60336907	0.88[ASN][1000 genomes]
rs60669462	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60779425	0.88[ASN][1000 genomes]
rs60953371	0.88[ASN][1000 genomes]
rs61088422	0.85[ASN][1000 genomes]
rs61109805	0.88[ASN][1000 genomes]
rs61177731	0.88[ASN][1000 genomes]
rs61341431	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469419	0.88[ASN][1000 genomes]
rs6980734	0.88[ASN][1000 genomes]
rs6988021	0.88[ASN][1000 genomes]
rs6999304	0.89[EUR][1000 genomes]
rs7000891	0.88[ASN][1000 genomes]
rs7001241	0.88[ASN][1000 genomes]
rs7001875	0.88[ASN][1000 genomes]
rs7004757	0.88[ASN][1000 genomes]
rs7005386	0.85[ASN][1000 genomes]
rs7018226	0.88[ASN][1000 genomes]
rs73277124	0.85[ASN][1000 genomes]
rs73279213	0.85[ASN][1000 genomes]
rs73279219	0.85[ASN][1000 genomes]
rs73279224	0.85[ASN][1000 genomes]
rs73279231	0.85[ASN][1000 genomes]
rs73289232	0.85[ASN][1000 genomes]
rs73289254	0.88[ASN][1000 genomes]
rs73289257	0.88[ASN][1000 genomes]
rs73289264	0.88[ASN][1000 genomes]
rs73289267	0.88[ASN][1000 genomes]
rs73291151	0.88[ASN][1000 genomes]
rs73291153	0.88[ASN][1000 genomes]
rs73291154	0.88[ASN][1000 genomes]
rs73291157	0.88[ASN][1000 genomes]
rs73291159	0.88[ASN][1000 genomes]
rs73291160	0.88[ASN][1000 genomes]
rs73291164	0.88[ASN][1000 genomes]
rs73291166	0.88[ASN][1000 genomes]
rs73291175	0.88[ASN][1000 genomes]
rs73291177	0.88[ASN][1000 genomes]
rs73291179	0.88[ASN][1000 genomes]
rs73291181	0.88[ASN][1000 genomes]
rs73291190	0.88[ASN][1000 genomes]
rs73291191	0.88[ASN][1000 genomes]
rs73692571	0.88[ASN][1000 genomes]
rs73694046	0.88[ASN][1000 genomes]
rs73694050	0.88[ASN][1000 genomes]
rs73694056	0.88[ASN][1000 genomes]
rs73694057	0.88[ASN][1000 genomes]
rs7462228	1.00[JPT][hapmap]
rs7814792	0.88[ASN][1000 genomes]
rs7814799	0.88[ASN][1000 genomes]
rs7845586	0.88[ASN][1000 genomes]
rs9297468	0.85[ASN][1000 genomes]
rs9297469	0.85[ASN][1000 genomes]
rs9297470	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891173	chr8:89509223-89996790	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv982107	chr8:89514721-89530521	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1024633	chr8:89517079-89959574	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539666	chr8:89517079-89959574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1027744	chr8:89526571-89609651	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89527800-89528400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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