Variant report

Variant	rs1586492
Chromosome Location	chr8:89468814-89468815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10093191	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10095262	0.97[ASN][1000 genomes]
rs10095499	0.97[ASN][1000 genomes]
rs10096195	0.97[ASN][1000 genomes]
rs10098834	0.97[ASN][1000 genomes]
rs10099075	0.97[ASN][1000 genomes]
rs10099233	0.97[ASN][1000 genomes]
rs10099461	0.97[ASN][1000 genomes]
rs10103178	0.90[ASN][1000 genomes]
rs10103336	0.97[ASN][1000 genomes]
rs10103474	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10110453	0.97[ASN][1000 genomes]
rs10112810	0.97[ASN][1000 genomes]
rs10113214	0.97[ASN][1000 genomes]
rs10504839	1.00[ASN][1000 genomes]
rs10504863	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1094197	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11995730	1.00[ASN][1000 genomes]
rs1394515	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1601816	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881745	0.97[ASN][1000 genomes]
rs16882035	0.97[ASN][1000 genomes]
rs16882334	0.97[ASN][1000 genomes]
rs16882368	0.97[ASN][1000 genomes]
rs16882408	0.97[ASN][1000 genomes]
rs16882464	1.00[ASN][1000 genomes]
rs16882621	1.00[ASN][1000 genomes]
rs16882622	1.00[ASN][1000 genomes]
rs16882960	1.00[ASN][1000 genomes]
rs16882980	1.00[ASN][1000 genomes]
rs16883962	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28414285	0.97[ASN][1000 genomes]
rs28453085	0.87[ASN][1000 genomes]
rs28581869	0.97[ASN][1000 genomes]
rs28758406	0.90[ASN][1000 genomes]
rs28768402	0.97[ASN][1000 genomes]
rs36116061	0.90[ASN][1000 genomes]
rs4559289	0.91[EUR][1000 genomes]
rs55684806	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55743536	1.00[ASN][1000 genomes]
rs55848977	1.00[ASN][1000 genomes]
rs56010350	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56039725	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56324438	1.00[ASN][1000 genomes]
rs56691611	1.00[ASN][1000 genomes]
rs56912549	0.97[ASN][1000 genomes]
rs57047577	1.00[ASN][1000 genomes]
rs57195479	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57771217	0.97[ASN][1000 genomes]
rs58164144	1.00[ASN][1000 genomes]
rs58337229	0.97[ASN][1000 genomes]
rs58399951	1.00[ASN][1000 genomes]
rs58414801	1.00[ASN][1000 genomes]
rs58453379	1.00[ASN][1000 genomes]
rs58720276	1.00[ASN][1000 genomes]
rs58723841	0.90[ASN][1000 genomes]
rs58754325	1.00[ASN][1000 genomes]
rs58994609	1.00[ASN][1000 genomes]
rs59043278	1.00[ASN][1000 genomes]
rs59107062	0.97[ASN][1000 genomes]
rs59119264	1.00[ASN][1000 genomes]
rs59290812	1.00[ASN][1000 genomes]
rs59425875	0.97[ASN][1000 genomes]
rs59430846	0.97[ASN][1000 genomes]
rs59484067	0.97[ASN][1000 genomes]
rs59580800	1.00[ASN][1000 genomes]
rs59645827	1.00[ASN][1000 genomes]
rs59759655	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59951423	0.97[ASN][1000 genomes]
rs60245117	1.00[ASN][1000 genomes]
rs60336907	1.00[ASN][1000 genomes]
rs60669462	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60779425	1.00[ASN][1000 genomes]
rs60953371	1.00[ASN][1000 genomes]
rs61088422	0.97[ASN][1000 genomes]
rs61109805	1.00[ASN][1000 genomes]
rs61177731	1.00[ASN][1000 genomes]
rs61341431	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469419	1.00[ASN][1000 genomes]
rs6980734	1.00[ASN][1000 genomes]
rs6988021	1.00[ASN][1000 genomes]
rs6999304	0.83[EUR][1000 genomes]
rs7000891	1.00[ASN][1000 genomes]
rs7001241	1.00[ASN][1000 genomes]
rs7001875	1.00[ASN][1000 genomes]
rs7004757	1.00[ASN][1000 genomes]
rs7005386	0.97[ASN][1000 genomes]
rs7018226	1.00[ASN][1000 genomes]
rs73277124	0.97[ASN][1000 genomes]
rs73279213	0.97[ASN][1000 genomes]
rs73279219	0.97[ASN][1000 genomes]
rs73279224	0.97[ASN][1000 genomes]
rs73279231	0.97[ASN][1000 genomes]
rs73289232	0.97[ASN][1000 genomes]
rs73289254	1.00[ASN][1000 genomes]
rs73289257	1.00[ASN][1000 genomes]
rs73289264	1.00[ASN][1000 genomes]
rs73289267	1.00[ASN][1000 genomes]
rs73291151	1.00[ASN][1000 genomes]
rs73291153	1.00[ASN][1000 genomes]
rs73291154	1.00[ASN][1000 genomes]
rs73291157	1.00[ASN][1000 genomes]
rs73291159	1.00[ASN][1000 genomes]
rs73291160	1.00[ASN][1000 genomes]
rs73291164	1.00[ASN][1000 genomes]
rs73291166	1.00[ASN][1000 genomes]
rs73291175	1.00[ASN][1000 genomes]
rs73291177	1.00[ASN][1000 genomes]
rs73291179	1.00[ASN][1000 genomes]
rs73291181	1.00[ASN][1000 genomes]
rs73291190	1.00[ASN][1000 genomes]
rs73291191	1.00[ASN][1000 genomes]
rs73692571	1.00[ASN][1000 genomes]
rs73694046	1.00[ASN][1000 genomes]
rs73694050	1.00[ASN][1000 genomes]
rs73694056	1.00[ASN][1000 genomes]
rs73694057	1.00[ASN][1000 genomes]
rs7462228	1.00[JPT][hapmap]
rs7814792	1.00[ASN][1000 genomes]
rs7814799	1.00[ASN][1000 genomes]
rs7845586	1.00[ASN][1000 genomes]
rs9297468	0.97[ASN][1000 genomes]
rs9297469	0.97[ASN][1000 genomes]
rs9297470	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89468400-89469000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr8:89468400-89469000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr8:89468600-89470400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:89468800-89471000	Weak transcription	Stomach Smooth Muscle	stomach

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